Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52889g00001 CAGAATGTGAAAACCTCGGACGAGAAGTTCACTTGTCCATACTGCCCTAAGAAAAGAAAACGGGATTATATGTACAAGGAACTCCTGCAACATGCTTCTGGGGTGGGTCAGAGTAGTTCCCAAAAGAGAAAGGCAAGAGAAAAGGCTACTCATTTGGCTTTAGTGAAATATTTGGAAAAGGATCTTATGAATATAGATGAGACTCCATCGGAACCAGCTGATAAAAGTGACACTCCTATTGATTCTGATGAACAGTTTGTGTGGCCTTGGATTGGAATTGTWGTTAATATTCCCACTAGCCGGACACCAGATGGACGCACTGTTGGGGCGAGTGGTTCCAAGCTTAGGGATGAGTACAGACGTAGGGGTTTCAATCCATTTCGAGTCAACCCTCTATGGAATTTCCGAGGTCACACTGGAACTGCCCTTGTGGAATTCAATAAAAACTGGCCTGGCTTCGATAATGCACTCGCATTTGAAAAAGCATATGCATTAGAACATCATGGGAAAAAGGATTGGTTAGTTAGTACGCAGCAGAAGTCGGGTCTTTATGCATGGGTTGCCCGAGCAGATGACTACAAAGCAAACAATATCATTGGGGAACATCTGCGAAAGATGGCCGATGTCAAAACCATACCAGAACTTATGGAAGAAGAAGCTCGAAGGCAGGATAAACTTGTGTCCAATTTGCACAACATTATTCAAAAAAAGATCAGCTCGTTCAATCTTATAATGAAGTTCTAG 744 0.4274 QNVKTSDEKFTCPYCPKKRKRDYMYKELLQHASGVGQSSSQKRKAREKATHLALVKYLEKDLMNIDETPSEPADKSDTPIDSDEQFVWPWIGIVVNIPTSRTPDGRTVGASGSKLRDEYRRRGFNPFRVNPLWNFRGHTGTALVEFNKNWPGFDNALAFEKAYALEHHGKKDWLVSTQQKSGLYAWVARADDYKANNIIGEHLRKMADVKTIPELMEEEARRQDKLVSNLHNIIQKKISSFNLIMKF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52889g00001 247 Pfam XS zinc finger domain 12 55 IPR005381 GO:0031047
Trme52889g00001 247 CDD RRM_like_XS 86 193 IPR005380 GO:0031047
Trme52889g00001 247 PANTHER RIBONUCLEASE P SUBUNIT P38 2 239 IPR045177 GO:0080188
Trme52889g00001 247 Gene3D XS domain 79 246 IPR038588 -
Trme52889g00001 247 Pfam XS domain 83 194 IPR005380 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52889g00001 Trme-Chr52889 1 926 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme52889g00001 XS 2.8e-39 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52889g00001 - - lja:Lj0g3v0241289.1 407.527