Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52828g00001 ATGTCCGAGCACTTGCCATTTCATTATGTAGAAATCTCAAGACTTCTTTTTGATCATGCACGAGACAACATCTCTGATGCATACATGGTGAGGTCTTTAATTGAGGACATCAGAGACGTAAGGTTTCATAAAGTTGAAACTGACTTGGAGGCATTCAATGGTCGTACAATAGCTGTGAAGGTAATTTGTCTAATCATTTCGGTGGTACAATGA 213 0.3897 MSEHLPFHYVEISRLLFDHARDNISDAYMVRSLIEDIRDVRFHKVETDLEAFNGRTIAVKVICLIISVVQ 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52828g00001 70 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 4 64 IPR007257 GO:0005634|GO:0006260
Trme52828g00001 70 Gene3D - 1 65 - -
Trme52828g00001 70 SUPERFAMILY GINS helical bundle-like 3 56 IPR036224 -
Trme52828g00001 70 CDD GINS_A_psf2 5 54 - -
Trme52828g00001 70 Pfam GINS complex protein 4 54 IPR021151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52828g00001 Trme-Chr52828 302 709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52828g00001 3 53 Core DNA Replication Machinery Family AT3G12530 72.549 1.06e-22 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52828g00001 K10733 - gmx:100780528 114.775