Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52822g00001 TATGGGCTTCCAGCTGATGTTTGGAGTCTGGGATGCACTGTGCTGGAGATGCTAACAGGCAAAATCCCATACTACAATTTAGAATGTATTTCTGCACTATTTAGAATTGCAAAAGGTGAGCTACCTCCTATTCCTGATACTCTTTCAAGAGACGCAAAGGATTTTATCTTGCAGTGCCTTCAAGTTAATCCCGATGATCGTCCTACTGCTGCTCAACTCTTAAACCATCCATTTCTCCAAAGGSYACTTTCCCAGTCTTAA 261 0.4176 YGLPADVWSLGCTVLEMLTGKIPYYNLECISALFRIAKGELPPIPDTLSRDAKDFILQCLQVNPDDRPTAAQLLNHPFLQRXLSQS 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52822g00001 86 Pfam Protein kinase domain 1 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52822g00001 86 ProSiteProfiles Protein kinase domain profile. 1 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52822g00001 86 Gene3D Transferase(Phosphotransferase) domain 1 2 86 - -
Trme52822g00001 86 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 85 - -
Trme52822g00001 86 SUPERFAMILY Protein kinase-like (PK-like) 1 82 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52822g00001 Trme-Chr52822 2 583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52822g00001 1 83 MAP Kinase Kinase Kinase AT4G08500 69.880 1.81e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trme52822g00001 Pkinase 3.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52822g00001 K13414 - gmx:100819999 152.91