Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52808g00001 GTTGTTGGCGGGGTTGATGATTGGGCGGTTAGGTTGAGAGGTCATAAGCTTGCTCAAGTTATTCTTTTTCAGAAACCGATTGTTAAGGTTAAGCTTGGTGATTTAATGGCTGCGACGAATAATTTTAGTTCGGAGAATGTTCTTATTACGACTAGGACCGGGGCTACTTATAGGGCTGATTTACCGGATGGTTCGACGCTCGCGGTGAAGAGGTTGAGTAGTTGTAAGATTGGTGAGAAGCAGTTTCGGATGGAGATGAATCGGTTGGAACAGGTTAGGCATCCGAATTTGGCTCCTTTGTTGGGGTATTGTGTTGTGGAAGAGGAGAAGCTTTTGGTTTATAAGCATATGTCGAATGGGACGCTTTTTTCGCTGTTGCATAAGAATAGTGGTGCGTTGGATTGGTTGATGAGGTTTAGGATAGGGTTGGGTGCGGCTAGGGGACTTGCGTGGTTGCATCATGGTTGTCATCCTCCGATTATACAACAGAATATTTGTTCTAATGTGATTCTTGTGGATGAAGAATTTGATGCTCGGATAATGGACTTTGGACTCGCCAGGCTTATGACGTCTGATGCCAATGGTAGTTTTGTGAACGGCGATTTGGGGGAACTTGGTTATATAGCTCCTGAGTATTCAAGTACGATGGTTGCTTCGTTGAAAGGGGATGTGTATGGATTCGGTGTTTTGCTTTTGGAGTTGGTCACCGGGTACAAACCTCTCGAGGTGAACCACGGCGATGAAGAGTTTAAGGGTAACTTGGTGGATTGGGTTAATGTGCATTCTAGTTCAGGTAGACTCAAGGATTGCATCGATAAGGCGATCAGTGGAAAAGGTAACGATGAGGAGATTCTGCAGTTTCTGAAAATCGCATCGAATTGTGTGATTACTCGCCCGAAAGATAG 905 0.4486 VVGGVDDWAVRLRGHKLAQVILFQKPIVKVKLGDLMAATNNFSSENVLITTRTGATYRADLPDGSTLAVKRLSSCKIGEKQFRMEMNRLEQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLFSLLHKNSGALDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARIMDFGLARLMTSDANGSFVNGDLGELGYIAPEYSSTMVASLKGDVYGFGVLLLELVTGYKPLEVNHGDEEFKGNLVDWVNVHSSSGRLKDCIDKAISGKGNDEEILQFLKIASNCVITRPKD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52808g00001 301 Gene3D Transferase(Phosphotransferase) domain 1 117 301 - -
Trme52808g00001 301 SUPERFAMILY Protein kinase-like (PK-like) 21 298 IPR011009 -
Trme52808g00001 301 Gene3D Phosphorylase Kinase; domain 1 4 116 - -
Trme52808g00001 301 ProSiteProfiles Protein kinase domain profile. 42 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52808g00001 301 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 4 116 - -
Trme52808g00001 301 Pfam Protein tyrosine and serine/threonine kinase 64 242 IPR001245 GO:0004672|GO:0006468
Trme52808g00001 301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 25 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52808g00001 Trme-Chr52808 3 907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52808g00001 7 301 Receptor kinase-like Gene Family AT1G27190 69.667 5.79e-148 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Trme52808g00001 PK_Tyr_Ser-Thr 7.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52808g00001 - - gmx:100810378 530.791