Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52750g00001 ATGTTCCCTCCAAAGAAGCCTTCAACTATGAATTCACATGATAGACCCATGTGTGTTCAAGGTGACTCAGGACTTGTTCTTACCACCGACCCGAAACCTCGTCTTCGATGGACTGTTGAACTCCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGACCTGATAAGGCAACTCCTAAAACTATCATGAGGGTTATGGGTGTCAAGGGTCTCACCCTTTACCATCTCAAGAGCCATCTTCAG 246 0.4593 MFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52750g00001 82 FunFam Myb family transcription factor 31 82 - -
Trme52750g00001 82 SUPERFAMILY Homeodomain-like 31 82 IPR009057 -
Trme52750g00001 82 Gene3D - 31 82 - -
Trme52750g00001 82 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Trme52750g00001 82 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 82 IPR044848 GO:0003700
Trme52750g00001 82 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 82 IPR006447 GO:0003677
Trme52750g00001 82 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 82 IPR017930 -
Trme52750g00001 82 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52750g00001 Trme-Chr52750 186 562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52750g00001 1 82 G2-like Transcription Factor Family AT1G79430 88.095 2.44e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme52750g00001 Myb_DNA-binding 5.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52750g00001 - - gmx:100807793 174.481