Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52738g00001 ATGGTGAAGAATGAATGGGGAATGTCTACCTATCCACTAGTTCCCGGGCATGAGATTGCTGGTATAGTTACAGAGGTGGGAAGCAAGGTACAAAAGTTCAAAGTTGGAGACAGAGTGGGTGTAGGCTGCATGGTTGATTCRTGTCGCACGTGCCAAAATTGCGAAGACAATCTTGAGAATTATTGYYCTMAATATACACTCACATATGGTGCAAAAYATAGTGAYGGCACAATCACATATGGAGGCTACTCTGACTCAATGGTTGCGGACGAGCATTTTGTGGTTCGCATTCCTGATGGCTTACCACTTGAAGCTGCTGCTCCTCTTCTTTGTGCTGGTATCACAGTGTATAGTCCTCTTAAATATTTTGGACTCGACAAGCCCGGGCTTCATATAGGTGTTGTTGGGCTTGGCGGACTTGGTCATATGGCTGTGAAATTCGCCAAAGCTTTTGGTGCTAATGTCACAGTAATTAGTACATCGCCTAACAAAGAAAAGGAAGCAATAGAACACTTAGGAGCTGATACATTTCTGATAAGTCGCGACCAAGATAAGATGCAGGCTGCAATAGGTACTTTGGATGGTATCATCGATACAGTTTCAGCGACTCATGCACTCTTGCCTCTAATTGGATTACTGAAGTCTCATGGAAAGCTT 657 0.4353 MVKNEWGMSTYPLVPGHEIAGIVTEVGSKVQKFKVGDRVGVGCMVDSCRTCQNCEDNLENYCXXYTLTYGAKXSDGTITYGGYSDSMVADEHFVVRIPDGLPLEAAAPLLCAGITVYSPLKYFGLDKPGLHIGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKEKEAIEHLGADTFLISRDQDKMQAAIGTLDGIIDTVSATHALLPLIGLLKSHGKL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52738g00001 219 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 218 IPR036291 -
Trme52738g00001 219 SUPERFAMILY GroES-like 2 129 IPR011032 -
Trme52738g00001 219 PANTHER ALDEHYDE REDUCTASE 1 219 IPR047109 GO:0016616
Trme52738g00001 219 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 16 30 IPR002328 GO:0008270|GO:0016491
Trme52738g00001 219 Gene3D - 1 111 - -
Trme52738g00001 219 CDD CAD1 1 219 IPR047109 GO:0016616
Trme52738g00001 219 Pfam Zinc-binding dehydrogenase 139 219 IPR013149 -
Trme52738g00001 219 Pfam Alcohol dehydrogenase GroES-like domain 5 96 IPR013154 -
Trme52738g00001 219 Gene3D - 112 219 - -
Trme52738g00001 219 FunFam Cinnamyl alcohol dehydrogenase 112 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52738g00001 Trme-Chr52738 1 890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52738g00001 1 219 Monolignol Biosynthesis Gene Families AT4G37980 69.863 1.57e-97 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52738g00001 K23232 - gmx:100816901 369.777