Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme526748g00001 GAGATGGCTGCTAAGTCCGATGATAAAACTCTTGTGGTAAGCAATATCACACGTGAAATAAGGGAGGAAGCTGATTTCCTTAAGCTTTTCGAGCCTTTTGGTGAGGTCAGCAGTGCCAAGCTTGCCCCTGCTCGTCATGATGGTACCGTTCTTGGGGCAGTTGGCTTTGTTACCTTTGTCTCCAAGGAAGATGCTGAGCGGGCTATGAACACACTCAATGGATATGGCCCGCGTGGCTGGGATCAACGCACCCTTACACTTGATTGGGCCTCCATCT 277 0.5018 EMAAKSDDKTLVVSNITREIREEADFLKLFEPFGEVSSAKLAPARHDGTVLGAVGFVTFVSKEDAERAMNTLNGYGPRGWDQRTLTLDWASI 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme526748g00001 92 Gene3D - 1 92 IPR012677 -
Trme526748g00001 92 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 92 IPR000504 GO:0003723
Trme526748g00001 92 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 75 IPR000504 GO:0003723
Trme526748g00001 92 SUPERFAMILY RNA-binding domain, RBD 6 90 IPR035979 GO:0003676
Trme526748g00001 92 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 4 90 - -
Trme526748g00001 92 SMART rrm1_1 10 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme526748g00001 Trme-Chr526748 1 277 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme526748g00001 1 91 Eukaryotic Initiation Factors Gene Family AT3G11400 40.659 1.18e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme526748g00001 K03248 - tpra:123898674 83.1889