Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme52648g00001 | CTTCCTATATTGTCTGTTATTGGGCCGTTGAGAGGCGAAAATCGTGAAGGTGATGTTGATGGTGGTGAGGCTGGGAAGAAATTGGGAGTTGAAGCAGTGATTGTTGCTCCTTCTAGAGAGCTTGGAATGCAGATTGTGAGAGAGTTTGAGAAGATATTGGGAGTGGATAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACTAGGCAGGAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTTGGTACGCCTGGTAGGATAGCTGAGCTCAGTGCAAGTGGGAAGCTTCGCACACACGGCTGTCAATATTTGGTATTAGATGAAGTTGATGAGCTGCTGTCATTCAATTTTCGTGAAGACATGCACAGGTTATTGGAGCATGTTGGGAGGAGATCAGGTGGAGACCTAAAATCAAATGCTAAAAAGGCCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCGGTTGTTAGGGCAGCTAAAAGTTGGGGTAGCGATCCGCTTCTTGTTCAAGCTAAGAAAATTGTACCACTTGAAACTTTGTCTCCTGAGCCGGTCAATTTGTCACCGAACTCGAGTGCTAACTCCTCTAAGCCATCTAAGGCTGTGGTAGAGAGTCTACCTCCAGCRTTGAAACACTATTACTGTGTTGTGAGGTTGCAGCACAAAGTTGATACATTGAGAAGGTGTATTCATGCATTGGATGCAAAATTTGTGATAGTTTTCATGAATCATACTAAGCAGCTAAAGGATGTTGTCTTTAAGCTCGAGGCCCGTGGCGTGAAAGCCGCAGAGTTACACGGTGATCTTGGGAAGCTTGGTAGGTCAACAACTCTGCAGAAGTTCAAGAACGGTGAGGTTAGAGTTCTTGTGACAAATGAATTATCAGCAAGAGGTTTAGATGTGGCAGAATGT | 936 | 0.4487 | LPILSVIGPLRGENREGDVDGGEAGKKLGVEAVIVAPSRELGMQIVREFEKILGVDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGGDLKSNAKKAERQLIMVSATVPFSVVRAAKSWGSDPLLVQAKKIVPLETLSPEPVNLSPNSSANSSKPSKAVVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLQKFKNGEVRVLVTNELSARGLDVAEC | 312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme52648g00001 | 312 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 233 | 312 | IPR001650 | - | |
| Trme52648g00001 | 312 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL | 1 | 312 | - | - | |
| Trme52648g00001 | 312 | Pfam | Helicase conserved C-terminal domain | 233 | 311 | IPR001650 | - | |
| Trme52648g00001 | 312 | Pfam | DEAD/DEAH box helicase | 27 | 163 | IPR011545 | GO:0003676|GO:0005524 | |
| Trme52648g00001 | 312 | CDD | DEADc | 19 | 178 | - | - | |
| Trme52648g00001 | 312 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 30 | 312 | IPR027417 | - | |
| Trme52648g00001 | 312 | SMART | ultradead3 | 6 | 196 | IPR014001 | - | |
| Trme52648g00001 | 312 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 177 | IPR014001 | - | |
| Trme52648g00001 | 312 | Gene3D | - | 1 | 179 | IPR027417 | - | |
| Trme52648g00001 | 312 | Gene3D | - | 215 | 312 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme52648g00001 | Trme-Chr52648 | 1 | 936 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme52648g00001 | 30 | 311 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 23.322 | 1.11e-21 | 92.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme52648g00001 | - | - | gmx:100812968 | 515.768 |