Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5262g00001 ATGGAGCCCGTATCATTTCCAGCTAATACAAGTGTAATTCTGGAGCATGAAGTCCCTACCTTTCTATATTTTATTGCAAGAGGTTCTGTGGACTTAATATTTCCTGAAGATATTATCGAAACGGTCGGACCTGGAAACGTTTTCGGTGAAACTTGCGTATTTTTCAATACACCACAAGTTTTCACCGCTACAACTAGAGAACAGAGTCACTTTCTCATGTTGGATCGAGTTAACCTCATAAGCATTCTTCATGGCTGCCCAAATGATACATCTCATATGATAGGTGACTACATTGATCAGGTTTTAAGTGTGAGCACCAATTCACACATGACTAAACTTCTGGAGGATTTCGAAGACAATGCAGAAAGAGTTGGTAGGATTGATCTACCGGTAAGCTTGATGTTTGCGTTTGAAAGAGGATATAGTCGATTGTTTGACCGACTTGTTGAAGAATATCCGGATCTTAATGAAAGCGACAGTACAGGGCGGACAGTTTTGCACCGAGCAGCATCACATGGAGATGTTTGGAAGGTTAATAAGCTACTTGGAATTGGGGCAAATCCAAATTCAAAGG 574 0.4077 MEPVSFPANTSVILEHEVPTFLYFIARGSVDLIFPEDIIETVGPGNVFGETCVFFNTPQVFTATTREQSHFLMLDRVNLISILHGCPNDTSHMIGDYIDQVLSVSTNSHMTKLLEDFEDNAERVGRIDLPVSLMFAFERGYSRLFDRLVEEYPDLNESDSTGRTVLHRAASHGDVWKVNKLLGIGANPNSK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5262g00001 191 Gene3D Jelly Rolls 1 99 IPR014710 -
Trme5262g00001 191 ProSiteProfiles Ankyrin repeat profile. 161 191 IPR002110 GO:0005515
Trme5262g00001 191 PANTHER POTASSIUM CHANNEL AKT1 1 190 IPR045319 GO:0005249|GO:0006813
Trme5262g00001 191 SUPERFAMILY Ankyrin repeat 131 190 IPR036770 -
Trme5262g00001 191 ProSiteProfiles cAMP/cGMP binding motif profile. 1 100 IPR000595 -
Trme5262g00001 191 SUPERFAMILY cAMP-binding domain-like 1 93 IPR018490 -
Trme5262g00001 191 SMART cnmp_10 1 98 IPR000595 -
Trme5262g00001 191 CDD CAP_ED 1 94 IPR000595 -
Trme5262g00001 191 Gene3D - 100 191 IPR036770 -
Trme5262g00001 191 ProSiteProfiles Ankyrin repeat region circular profile. 161 191 - -
Trme5262g00001 191 Pfam Cyclic nucleotide-binding domain 4 83 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5262g00001 Trme-Chr5262 123 1118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5262g00001 1 189 Ion Channels AT2G25600 36.269 6.23e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5262g00001 K21867 - dcr:108206416 119.398