Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52610g00001 ATGCGGGCTAAAGTCGCTGATTTTGGATTTGCAAAGCTTGGTCCCGTAAACAATGACCATACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCATCTCACTCCTAGAAGTGATGTTTACTCGTTTGGAATTTTGCTTTTAGAAATTCTGACTGGCCGTCGTCCTGTGGAGTTGAAAAAAAGTCCTGAAGAACGAGTTACATTAAGATGGGTTTGCATCCAGCCAAGTGAAGTGATCCTGAAACAATTTGATATGAGCGGCAGACTTATTCAATTCCAAAAGGATTTGTATCAATTGATTAGAGAAAATTAG 345 0.3884 MRAKVADFGFAKLGPVNNDHTHISTKVKGTVGYLDPEYMKTYHLTPRSDVYSFGILLLEILTGRRPVELKKSPEERVTLRWVCIQPSEVILKQFDMSGRLIQFQKDLYQLIREN 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52610g00001 114 PANTHER OS01G0750732 PROTEIN 1 82 - -
Trme52610g00001 114 Pfam Protein kinase domain 3 74 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52610g00001 114 SUPERFAMILY Protein kinase-like (PK-like) 2 86 IPR011009 -
Trme52610g00001 114 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52610g00001 114 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52610g00001 Trme-Chr52610 326 867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52610g00001 3 85 Receptor kinase-like Gene Family AT3G58690 53.012 9.68e-24 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Trme52610g00001 Pkinase 2.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52610g00001 - - vvo:131633181 164.081