Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52606g00001 ATGTTTATGCGTCTTCCTAGAGCCTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCGCCTTATCTCAAAACAGTTTGTGTTTATGGAGGTGTTTCTTATGTTACTCAACAGAGTGCACTTTCACGTGGTGTTGATGTGGTTGTTGGAACTCCTGGTAGGCTGATTGACCTCATCAATGGGAACACACTTAGGTTGAATGAAGTTGAGTATTTGGTACTCGACGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTCATTTTGGAAAAGCTTCCACCTAAGAGACAAAGCATGCTTTTTTCTGCAACCATGCCTACTTGGGTCAAAAAATTGGCCAGGAAATATTTGAACAATCCATTGACTATTGATTTGGTACGCTGTTCTTACTTCAGGCTTCGATTCTCCAAAGATACATAG 459 0.4248 MFMRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLRLNEVEYLVLDEADQMLAVGFEEDVEVILEKLPPKRQSMLFSATMPTWVKKLARKYLNNPLTIDLVRCSYFRLRFSKDT 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52606g00001 152 CDD DEADc 4 137 - -
Trme52606g00001 152 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 138 - -
Trme52606g00001 152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 136 IPR027417 -
Trme52606g00001 152 SMART ultradead3 1 147 IPR014001 -
Trme52606g00001 152 Gene3D - 3 140 IPR027417 -
Trme52606g00001 152 Pfam DEAD/DEAH box helicase 6 125 IPR011545 GO:0003676|GO:0005524
Trme52606g00001 152 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 136 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52606g00001 Trme-Chr52606 300 904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52606g00001 7 136 Eukaryotic Initiation Factors Gene Family AT1G72730 46.970 2.08e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52606g00001 - - csv:101218035 246.128