Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme525619g00001 ATGAAGGCTTTAGTTTTAGAGTACATGGAGAATGGGAATTTGGATAGCATCATACATGATAAAGAAGTAGATCAGTCGAGGTGGACATTATCTGAAAGAGTCCGCGTTTTCATTTCTATCGCGAGTGGATTGGATTACTTGCACTCTGGCTACGGTTCTCCCATTGTCCACTGTGATCTAAAGCCTTCTAACATCCTTTTAGATAGAGATTTTGAA 216 0.3981 MKALVLEYMENGNLDSIIHDKEVDQSRWTLSERVRVFISIASGLDYLHSGYGSPIVHCDLKPSNILLDRDFE 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme525619g00001 72 Pfam Protein kinase domain 4 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme525619g00001 72 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 71 - -
Trme525619g00001 72 ProSitePatterns Serine/Threonine protein kinases active-site signature. 55 67 IPR008271 GO:0004672|GO:0006468
Trme525619g00001 72 SUPERFAMILY Protein kinase-like (PK-like) 3 71 IPR011009 -
Trme525619g00001 72 Gene3D Transferase(Phosphotransferase) domain 1 1 72 - -
Trme525619g00001 72 ProSiteProfiles Protein kinase domain profile. 1 72 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme525619g00001 Trme-Chr525619 1 216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme525619g00001 2 70 Receptor kinase-like Gene Family AT5G46330 60.870 2.32e-22 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme525619g00001 Pkinase 1.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme525619g00001 K13420 - qsu:112030622 133.265