Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5255g00001 ATGGATGGTAAAAAAACATGTGCTGCTTGCAAAATTTCCAAAAAACCTTGTACCGATTCCTGCCCTATTAAGCCGTTTTATCCGGATCCACATGAAGATTATGATGACATTAATGAAGTATTTTCGGTGGAACATTTGAAAGATTGGCTTAAAAAAACCACCGATGAACAAAAGCAAAACCTTATTGAAGCCTTGGCTTGGGAGTCTGGAATTCGAAAGCAAGATCCGATCTCTGGATCCTTTGGTGTCTATAAGAAAATATGTGAAGAAAATCTCCAATTGAAAGTGGAACAGAAGTTGAGCAAGATGAAAATTGAGACATTGGAAGGAAAGATCGCGGCGATCTCAGAAGAGCATTTTAACTTGTGGGTAGAAGCTGAAGAGCTTAAAAAGAAGGCCTCCAGTTCATAA 411 0.3869 MDGKKTCAACKISKKPCTDSCPIKPFYPDPHEDYDDINEVFSVEHLKDWLKKTTDEQKQNLIEALAWESGIRKQDPISGSFGVYKKICEENLQLKVEQKLSKMKIETLEGKIAAISEEHFNLWVEAEELKKKASSS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5255g00001 136 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 105 - -
Trme5255g00001 136 Pfam Lateral organ boundaries (LOB) domain 7 100 IPR004883 -
Trme5255g00001 136 ProSiteProfiles LOB domain profile. 5 105 IPR004883 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5255g00001 5 90 AS2 family AT1G06280 32.184 3.52e-17 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme5255g00001 LOB 4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5255g00001 - - csv:101211216 79.3369