LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme52545g00001	GGTGATTTCGATGCACAGCGTAAATCTTGTAAGATACTTAAGGTTGAGCCTTTCAATTCCGACAGGAAGAAGATGTCTGTACTCATAGGTCTTCCCGATGGAGGGGCTCGAGCTTTCTGCAAAGGTGCATCAGAAATAGTGTTGAAAATGTGTGATAAAATAATTGATAGTAATGGAACAACTGTTGATCTTCCTGAAGAGAAAGCAAAGATTGTGAATGACATTATAGATGGATTTGCCAATGAANCTTTGAGAACTCTTTGTTTGGCTGTCAAAGAGATAGATGAAACACAAGGCGAAACCAGCATCCCTGAAAGTGGATATACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTGCGCCCTGGAGTTAAGGAAGCTGTTCAAAAATGTTTAGCAGCTGGAATAAGTGTACGCATGGTCACCGGTGATAACATAAATACAGCTAAGGCTATAGCTAGAGAATGTGGTATACTTACTGAAGGTGGTGTAGCTATAGAAGGACCAGAATTTCGCAATTTGTCTCCAGAACAAATGAAGGATATCATACCAAGAATTCAGGTAATGGCACGATCGTTACCTCTTGACAAGCATACCTTGGTAACCCGTTTGAGAAATATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGACTTGCCATGGGAATTGCTGGAACCGAGGTTTGTTTATAG	732	0.4167	GDFDAQRKSCKILKVEPFNSDRKKMSVLIGLPDGGARAFCKGASEIVLKMCDKIIDSNGTTVDLPEEKAKIVNDIIDGFANEXLRTLCLAVKEIDETQGETSIPESGYTLIAIVGIKDPVRPGVKEAVQKCLAAGISVRMVTGDNINTAKAIARECGILTEGGVAIEGPEFRNLSPEQMKDIIPRIQVMARSLPLDKHTLVTRLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVCL	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme52545g00001	243	Pfam	haloacid dehalogenase-like hydrolase	75	228	-	-
	Trme52545g00001	243	Gene3D	-	1	112	IPR023299	GO:0000166
	Trme52545g00001	243	PRINTS	P-type cation-transporting ATPase superfamily signature	112	123	-	-
	Trme52545g00001	243	PRINTS	P-type cation-transporting ATPase superfamily signature	215	234	-	-
	Trme52545g00001	243	PRINTS	P-type cation-transporting ATPase superfamily signature	134	144	-	-
	Trme52545g00001	243	SUPERFAMILY	HAD-like	106	241	IPR036412	-
	Trme52545g00001	243	PRINTS	H+-transporting ATPase (proton pump) signature	215	231	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme52545g00001	243	PRINTS	H+-transporting ATPase (proton pump) signature	72	90	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme52545g00001	243	FunFam	copper-transporting ATPase 1 isoform X2	114	159	-	-
	Trme52545g00001	243	Gene3D	-	113	243	IPR023214	-
	Trme52545g00001	243	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	2	124	IPR023299	GO:0000166
	Trme52545g00001	243	Pfam	Cation transport ATPase (P-type)	4	54	-	-
	Trme52545g00001	243	PANTHER	CATION TRANSPORTING ATPASE	2	241	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme52545g00001	Trme-Chr52545	88	900	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme52545g00001	1	242	Primary Pumps ATPases	AT2G41560	74.486	1.71e-124	373

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme52545g00001	K01537		-	gmx:100785768	402.519