Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52518g00001 TACGAGGCAGATGCTCAAATGACGTTCTTGGCAGTTAGCAGACAGGTTGATGCAGTTATAACCGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAGATGGACAAGTTTGGTCAAGGAGTTCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAATTTTGAAGGGTTCAACAGACAAATGCTWCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCCGTCCTTGCCAGGTTCTTAA 261 0.3985 YEADAQMTFLAVSRQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELNFEGFNRQMLLEMCILSGCDYLPSLPGS 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52518g00001 86 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 10 30 IPR006084 -
Trme52518g00001 86 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 68 83 IPR006084 -
Trme52518g00001 86 Gene3D - 64 86 - -
Trme52518g00001 86 Gene3D - 1 63 - -
Trme52518g00001 86 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 85 IPR006084 -
Trme52518g00001 86 SUPERFAMILY PIN domain-like 1 78 IPR029060 -
Trme52518g00001 86 Pfam XPG I-region 1 78 IPR006086 GO:0004518
Trme52518g00001 86 SMART xpgineu 1 65 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52518g00001 Trme-Chr52518 2 595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52518g00001 2 85 Core DNA Replication Machinery Family AT5G26680 32.955 3.51e-08 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52518g00001 K10746 - gmx:100798062 168.318