Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52442g00001 ATGTACTACAAGGAAGCAGACAAACCAGCACATGCTCGCACTTCAAACTTGAACGAGGAGCTTGGTCAAGTTGACACAATACTTTCTGATAAAACTGGAACTTTGACCTGCAACTCAATGGAATTCATTAAATGTTCGATCGCTGGTGTAGCTTATGGCCGTGGTGTTACGGAGGTTGAGAAGACCATGAGTAGAAGAAAAAGTTCAACGTTAGTTCGTGAGCATGATATATCAGAAGAAGATGACATCAGGGGTTCTCTTAATAAAAAAGCTGCCATAAAAGGTTTTAACTTTACTGATGAAAGAATAATGAATGGTAATTGGGTTAATGAGCCTCATGCAGATGTTATCGAGAAGTTTTTTCGCCTATTGGCAGTCTGTCATACAGCCATACCAGAAGTAGATAAAGACACTGGAAATGTGTCGTACGAGGCCGAATCTCCTGATGAAGCAGCATTTGTTATTGCGGCAAGAGAACTTGGTTTTGAATTCTACAAAAGGGCTCAGACTAGTTTATCAACATACGAGTTGGATCCAGTTTCGGGCGATAAAGTTGAAAGGACTCGATCTCGATTCCGACTAGACATTGATCAAGTAGGAGAATATAGAACTGAATAG 618 0.4045 MYYKEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEKTMSRRKSSTLVREHDISEEDDIRGSLNKKAAIKGFNFTDERIMNGNWVNEPHADVIEKFFRLLAVCHTAIPEVDKDTGNVSYEAESPDEAAFVIAARELGFEFYKRAQTSLSTYELDPVSGDKVERTRSRFRLDIDQVGEYRTE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52442g00001 205 Gene3D - 33 195 IPR023299 GO:0000166
Trme52442g00001 205 SUPERFAMILY HAD-like 16 60 IPR036412 -
Trme52442g00001 205 ProSitePatterns E1-E2 ATPases phosphorylation site. 30 36 IPR018303 -
Trme52442g00001 205 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52442g00001 Trme-Chr52442 29 869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52442g00001 1 190 Primary Pumps ATPases AT1G26130 73.158 2.75e-92 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52442g00001 K01530 - gmx:100792960 324.324