Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52362g00001 ATGACTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACTGCTCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGCGGTCTAGTGGGACTAGAGCCCACTAGGGTTGCGGAAATCCTCAAAGATCGTCCTTTGTGGTTTCGYGATTGCCGAGCTGTTGATATTGTCAATGTGCTACCCACTGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGAGACTTCTG 353 0.4844 MTSQHPPRDASPAGLLSIAEETLAEFLSKATGTAPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDIVNVLPTANGGTIELLYMQLYAPTTLAPARDF 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52362g00001 117 Pfam START domain 34 117 IPR002913 GO:0008289
Trme52362g00001 117 SUPERFAMILY Bet v1-like 9 117 - -
Trme52362g00001 117 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 2 117 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52362g00001 Trme-Chr52362 11 887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52362g00001 1 117 Homeobox Transcription Factor Family AT1G52150 81.890 7.86e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52362g00001 K09338 - gmx:100800165 225.713