Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme523581g00001 ATGAAGTTTCCACGCCGTGTTCAACAGTACTGCATTCCGAAGATTCTAGAAGGTCGTCATGTAATTGGAATCGATGAGACTGGTAGCGGTAAAACGGCGGCGTTTGCGCTTCCGATTCTTCAGCGACTAGCTGAG 135 0.4889 MKFPRRVQQYCIPKILEGRHVIGIDETGSGKTAAFALPILQRLAE 45
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme523581g00001 45 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 44 - -
Trme523581g00001 45 Gene3D - 1 45 IPR027417 -
Trme523581g00001 45 Pfam DEAD/DEAH box helicase 6 44 IPR011545 GO:0003676|GO:0005524
Trme523581g00001 45 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 44 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme523581g00001 Trme-Chr523581 1 135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme523581g00001 4 43 Eukaryotic Initiation Factors Gene Family AT5G11200 45.000 9.42e-06 38.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme523581g00001 K14778 - gmx:100798597 77.0257