Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52344g00001 ATGGATTTAGTGGACCCACCTGAAAGCTGTGCTGTGTGTCTTACTGAGTTCGAGGATAACGATGAGATCAGACGGTTAGCGAATTGTAGACACATTTTTCATCGAGGTTGTTTGGACCGTTGGATGGGTTATGATCAGAGAACGTGTCCTTTGTGTAGAACACCTTTTATACCTGATGATATGCAAAGTGCTTTTAATGAGAGATTATGGGCTGCTTCTGGGATACCTGAATTTCACTCTGATGTTCTTGCTTTGTAG 258 0.4225 MDLVDPPESCAVCLTEFEDNDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDDMQSAFNERLWAASGIPEFHSDVLAL 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52344g00001 85 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 57 IPR013083 -
Trme52344g00001 85 SMART ring_2 10 52 IPR001841 -
Trme52344g00001 85 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
Trme52344g00001 85 SUPERFAMILY RING/U-box 7 59 - -
Trme52344g00001 85 PANTHER RING ZINC FINGER PROTEIN-RELATED 9 73 - -
Trme52344g00001 85 SMART ringv_2 9 53 IPR011016 GO:0008270
Trme52344g00001 85 Pfam Ring finger domain 9 53 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52344g00001 Trme-Chr52344 452 709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52344g00001 4 74 C3H Transcription Factor Family AT1G63840 70.270 1.75e-33 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52344g00001 K16281 - jre:108997441 160.999