Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52318g00001 ATGAAACAAATCAAACGTGAAGTTTCCGTGATGCGTCTCGTTCGTCATCCACACATCGTTGAATTGAAAGAGGTGATGGCAAACAAAGCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNGAACATGTTGCTAGAAAATATTTTCAACAATTAATCAGTGCTGTTGATTTCTGTCATAGCCGTGGTGTTACACACCGTGATCTCAAACCTGAGAATCTTCTTTTGGATGAAAATGAAGATCTTAAGGTTACTGATTTTGGTTTATCTGCTTTGCCGGATCAACGAAGATCCGACGGTATGCTTCTCACACCGTGTGGGACTCCGGCGTACGTTGCGCCGGAGGTTTTGAAAAAGATAGGCTATGATGGTTCTAAAGCTGATATTTGGTCTTGTGGTGTTATTCTATTTGCTTTGCTTTGTGGTTATTTACCCTTTCAAGGTGAAAATGTCATGAGAATTTATAGCAAATCTTTTAAAGCTGATTATGCTTTACCTGAATGGATCTCACCAGGAGCTAAGAAATTGATATCTAATTTGCTTTGTGTTGATCCTGAAAAGAGATTTTCTATAGCTGATATCATGAAAGATCCTTGGTTTCAAGTTGGGTTTATGAGACCTATTGCTTTTTCAATGAAAGAATCTGCTGTGGATGATAACATTGATTTCAGTGGAGATGAAGGAAACAATGGCAGTGATGGAAATGCTGCTGATGTTGTGGATGGAATTGTTGGAACAAAGGGTACTCAT 789 0.3523 MKQIKREVSVMRLVRHPHIVELKEVMANKAXXXXXXXXXXXXXXXXXXXXXXXXEHVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVTDFGLSALPDQRRSDGMLLTPCGTPAYVAPEVLKKIGYDGSKADIWSCGVILFALLCGYLPFQGENVMRIYSKSFKADYALPEWISPGAKKLISNLLCVDPEKRFSIADIMKDPWFQVGFMRPIAFSMKESAVDDNIDFSGDEGNNGSDGNAADVVDGIVGTKGTH 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52318g00001 263 Gene3D Transferase(Phosphotransferase) domain 1 1 240 - -
Trme52318g00001 263 SMART serkin_6 2 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52318g00001 263 Pfam Protein kinase domain 2 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52318g00001 263 Coils Coil 22 30 - -
Trme52318g00001 263 SUPERFAMILY Protein kinase-like (PK-like) 2 219 IPR011009 -
Trme52318g00001 263 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52318g00001 263 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 215 - -
Trme52318g00001 263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Trme52318g00001 263 Coils Coil 55 55 - -
Trme52318g00001 263 MobiDBLite consensus disorder prediction 234 263 - -
Trme52318g00001 263 FunFam Maternal embryonic leucine zipper kinase 1 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52318g00001 Trme-Chr52318 151 939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52318g00001 1 232 CBL-interacting serine-threonine protein kinases AT5G25110 60.776 1.59e-99 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme52318g00001 Pkinase 3.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52318g00001 - - gmx:100797846 380.948