Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52252g00001 ATGATAGATAACCCGAAATGGAATGAAAACTTTCACATTTACTCAGCTCATTCAATCTCCAGTATCATATTCACTGTTAAACAAGACAAACCCATTGGAGCAACTCTAATTGGAAGAGCTTATGTTCCAGTTGAACAAGTCATAAAGGGTAACATAGTAAACACATGGATTCAAATATTAGATGTGGAACATCGTCCAATACAAGGTGGTTCCAAAATCCATGTTCAAATTCAATTCTCACATGTTAAAAATGATCCAAATTGGTCACAAGGACTAAAGAGTCCACAATTTCAAGGAGTTCCTCACACTTTCTTTAAACAAAGTAATGGTTGCCAAATCACTCTTTACCAAGATGCACATGTTATAGATGGTTCTATTCCGTATATTCCGTTGGACGGAGTAGAACGTTACGTGCCAGGAAAATGTTGGGAAGATATTTACAGTGCAATTAATGATGCTAAGCATTTTATTTGCATAACTGGTTGGTCTGTTTATACTGAGATAACCTTGATTAGGGACCTAAACAAATCAACAAGAACAAGCATCACACTTGGAGAGCTTCTTAAGAAGAAAGCCAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCTGATTTTAAGAAAGATGGTTTGATGGAAACTCATGATCAAGAAATTGGAGAGTATTTTAGAAACACAAATGTTCATTGTGTTTTGTGTCCGCGTAATCCTGGTCATGGAAGAAGTATAGTTCAAGGTTTTGAAATTTCAACCATGTTCACTCATCATCAAAAGACTATAATTGTTGACAGTAGAATTGTTGGTTCTGGACAATGGAATAAGAGAACAATCACAAGTTTTGTTGGTGGGATTGATTTGTGTGATGGAAGATATGATACCATGGAACATCCTTTGTT 914 0.3578 MIDNPKWNENFHIYSAHSISSIIFTVKQDKPIGATLIGRAYVPVEQVIKGNIVNTWIQILDVEHRPIQGGSKIHVQIQFSHVKNDPNWSQGLKSPQFQGVPHTFFKQSNGCQITLYQDAHVIDGSIPYIPLDGVERYVPGKCWEDIYSAINDAKHFICITGWSVYTEITLIRDLNKSTRTSITLGELLKKKANEGVNVLMLVWDDRTSVPDFKKDGLMETHDQEIGEYFRNTNVHCVLCPRNPGHGRSIVQGFEISTMFTHHQKTIIVDSRIVGSGQWNKRTITSFVGGIDLCDGRYDTMEHPL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52252g00001 304 Pfam Phospholipase D Active site motif 257 296 IPR001736 GO:0003824
Trme52252g00001 304 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 257 296 IPR001736 GO:0003824
Trme52252g00001 304 SMART pld_4 257 296 IPR001736 GO:0003824
Trme52252g00001 304 Pfam C2 domain 4 58 IPR000008 -
Trme52252g00001 304 Gene3D Endonuclease Chain A 133 304 - -
Trme52252g00001 304 Gene3D C2 domain 3 92 IPR035892 -
Trme52252g00001 304 SUPERFAMILY Phospholipase D/nuclease 85 299 - -
Trme52252g00001 304 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 81 IPR035892 -
Trme52252g00001 304 PANTHER PHOSPHOLIPASE D 3 304 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52252g00001 Trme-Chr52252 1 914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52252g00001 4 304 Phospholipase D Gene Family (Wang group) AT3G15730 62.583 1.04e-135 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52252g00001 K01115 - gmx:100791688 453.751