Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52233g00001 AAGATTGCAATTGAACCCAAAACTAAAGCTGACATTGACAAGATGGCAGCTGGTTTAGTCAAGCTTGCACAGGAAGACCCTTCTTTCCACTTCTCCCGTGATGAAGAGATAAACCAGACAGTGATCGAAGGAATGGGAGAATTGCATCTTGAAATCATCGTTGATCGTCTCAAAAGAGAATATAAGGTAGAAGCTAATGTTGGTGCTCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAATCACGGAAGTAAGATATGTGCACAAGAAACAATCAGGCGGACAAGGTCAGTTTGCAGATATAACCGTACGTTTTGAACCCATGGATCCAGGTAGTGGATATGAATTCAAGAGTGAAATCAAAGGAGGTTCAGTTCCAAAAGAATATGTTCCTGGTGTGGTTAAAGGATTGGAAGAGTGTATGAGCAATGGTGTTCTAGCCGGCTTTCCGGTTGTTGATGTACGCGCAGTACTTGTGGATGGTACTTACCATGATGTGGATTCAAGTGTGTTGGCTTTCCAGTTGGCAGCGAGAGGAGCTTTTCGGGAAGGGATGAGAAAAGCCGGACCGAGAATGCTTGAACCTATAATGAAAGTTGAAGTTGTTACTCCTGAAGAACATTTAGGAGATGTAATCGGTGATCTCAACTCAAGAAGAGGACAAATCAACAGTTTTGGTGACAAACCAGGTGGACTCAAGATATCGAATCGGTGA 714 0.43 KIAIEPKTKADIDKMAAGLVKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREYKVEANVGAPQVNYRESISKITEVRYVHKKQSGGQGQFADITVRFEPMDPGSGYEFKSEIKGGSVPKEYVPGVVKGLEECMSNGVLAGFPVVDVRAVLVDGTYHDVDSSVLAFQLAARGAFREGMRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKISNR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52233g00001 237 CDD EFG_mtEFG_C 194 235 IPR035649 -
Trme52233g00001 237 CDD EFG_III 2 71 IPR009022 -
Trme52233g00001 237 Gene3D - 190 236 - -
Trme52233g00001 237 Pfam Elongation Factor G, domain III 2 68 IPR041095 -
Trme52233g00001 237 FunFam Elongation factor G 1 75 - -
Trme52233g00001 237 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 2 231 - -
Trme52233g00001 237 SMART EFG_C_a 191 234 IPR000640 -
Trme52233g00001 237 SUPERFAMILY EF-G C-terminal domain-like 2 72 IPR035647 -
Trme52233g00001 237 SMART EFG_IV_2 71 189 IPR005517 GO:0005525
Trme52233g00001 237 Pfam Elongation factor G C-terminus 192 228 IPR000640 -
Trme52233g00001 237 SUPERFAMILY Ribosomal protein S5 domain 2-like 70 190 IPR020568 -
Trme52233g00001 237 Gene3D - 76 189 IPR014721 -
Trme52233g00001 237 FunFam Elongation factor G 76 207 - -
Trme52233g00001 237 SUPERFAMILY EF-G C-terminal domain-like 194 229 IPR035647 -
Trme52233g00001 237 CDD EFG_mtEFG1_IV 74 189 IPR005517 GO:0005525
Trme52233g00001 237 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1 75 - -
Trme52233g00001 237 Pfam Elongation factor G, domain IV 70 188 IPR005517 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52233g00001 Trme-Chr52233 2 924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52233g00001 1 230 Eukaryotic Initiation Factors Gene Family AT1G56070 24.296 9.45e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52233g00001 K02355 - csv:101220931 452.21