Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme521956g00001 CGTGTGAAGCCAGACATAGTTGCATATGGACGAGACATAATGGGATCAAAAATTAGTTCGGGTTGTAAAAGCTTATCAGGAACCAGTGTTGCAAGTCCTGTAGTTGCTGGTGTTGTGTGTTTGCTTGTCAGTGTCATTCCTGAACCTGACCGCAAAAATCTCTTAAACCCAGCAAGCATGAAACAAGCATTGGTCGAGGGTGCTGCAAAGCTTGCTGGGCCTAACATGTACGAGCAGGGTGCTGGCAGAGTTGATCTGTAG 261 0.4674 RVKPDIVAYGRDIMGSKISSGCKSLSGTSVASPVVAGVVCLLVSVIPEPDRKNLLNPASMKQALVEGAAKLAGPNMYEQGAGRVDL 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme521956g00001 86 Gene3D Peptidase S8/S53 domain 1 86 IPR036852 GO:0004252|GO:0006508
Trme521956g00001 86 ProSitePatterns Serine proteases, subtilase family, serine active site. 27 37 IPR023828 -
Trme521956g00001 86 ProSiteProfiles Serine proteases, subtilase domain profile. 1 86 - -
Trme521956g00001 86 Pfam Subtilase family 2 74 IPR000209 GO:0006508|GO:0008236
Trme521956g00001 86 SUPERFAMILY Subtilisin-like 2 86 IPR036852 GO:0004252|GO:0006508
Trme521956g00001 86 PANTHER PEPTIDASE S8 2 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme521956g00001 Trme-Chr521956 2 262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme521956g00001 1 86 Subtilisin-like Serine Gene Family AT5G19660 91.860 1.09e-49 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme521956g00001 K08653 - gmx:100819188 162.925