Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52176g00001 AAGGTTTCTAATCGCGAGTCTGCCAGAAGGTCCAGAAGAAGAAAACAAGCACATTTGGCAGACCTCGAGGTTCAGGTTGAACAGTTGAGACTTGAAAATGCAAGCCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGATGCTAACACTAATAACAGAGTGCTAAAATCAGATGTTGAAGCTTTGAGAGCTAAGGTGAAGTTAGCAGAGGATATGGTCTCTAGGGGCACTTTACCCACTTTTAACAACCATCTTCTCCAAAATCAGAGCCAATTGAACACCANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNGGACAGAATTCAGCAATTGGACTTGGAGACTTTGATATATCTTGCAGTGATTTCAACAATGGAGTCAATAGTGATGCTGTGAGCTCTTTGACTAGCATATGGCCATAA 492 0.3374 KVSNRESARRSRRRKQAHLADLEVQVEQLRLENASLFKQLTDASQQFRDANTNNRVLKSDVEALRAKVKLAEDMVSRGTLPTFNNHLLQNQSQLNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNSAIGLGDFDISCSDFNNGVNSDAVSSLTSIWP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52176g00001 163 SUPERFAMILY Leucine zipper domain 2 46 IPR046347 GO:0003700|GO:0006355
Trme52176g00001 163 Coils Coil 94 96 - -
Trme52176g00001 163 CDD bZIP_plant_GBF1 10 48 IPR045314 GO:0003700|GO:0006355
Trme52176g00001 163 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 1 14 IPR004827 GO:0003700|GO:0006355
Trme52176g00001 163 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 1 57 IPR004827 GO:0003700|GO:0006355
Trme52176g00001 163 Coils Coil 5 74 - -
Trme52176g00001 163 SMART brlzneu 3 56 IPR004827 GO:0003700|GO:0006355
Trme52176g00001 163 PANTHER BASIC LEUCINE ZIPPER 63 1 92 - -
Trme52176g00001 163 Pfam bZIP transcription factor 1 46 IPR004827 GO:0003700|GO:0006355
Trme52176g00001 163 Gene3D - 1 51 - -
Trme52176g00001 163 FunFam BZIP transcription factor 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52176g00001 Trme-Chr52176 146 910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52176g00001 3 163 bZIP Transcription Factor Family AT5G24800 46.584 1.12e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trme52176g00001 bZIP_1 3.6e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52176g00001 K25784 - gmx:100776831 152.14