Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52130g00001 TCTGTATCAGCATCCACCGACCACGCTGCTCTCTCCGAACAAAGACAACAGTCTTCTTCGTTGAATGTCGATAAACCTGCTGATGATGGTTACAATTGGAGGAAGTATGGACAGAAACACGTGAAAGGTAGCGAGTTTCCTCGAAGTTATTATAAGTGCACACATCCTAGCTGTCCTGTCAAGAAAAAGGTTGAGCGCTCGCTTGCTGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACAATCATCAACGTCCGAGTAACAAGCGATCAAAAGATACTCTAACTTCAAATGACAGTTCAAATATGCAAGGGAATGCTGATTCGTCTTATCAAGGGATGATGGATCCAGAATCTAGTCAGGCAACAGGTGAACATGTATCCGGAACAAGTGATAGTGAGGAAATTGGTGATCNTNNNNNNNNNNTNNNNNNNNNNAGAGTTGAGCCTGACCCTAAAAGGAGAAATACAGAAATCGTGGTCTCTGATCCTGCAGCTTCTTCACATAGGACTGTAGCGGAGTCTAGAATCATCGTGCAAACAACTAGTGAAGTTGATCTTTTAGATGATGGTTATCGATGGAGAAAATATGGACAAAAAGTTGTCAAAGGCAACCCTTATCCTAG 626 0.4089 SVSASTDHAALSEQRQQSSSLNVDKPADDGYNWRKYGQKHVKGSEFPRSYYKCTHPSCPVKKKVERSLAGHVTAIIYKGEHNHQRPSNKRSKDTLTSNDSSNMQGNADSSYQGMMDPESSQATGEHVSGTSDSEEIGDXXXXXXXXRVEPDPKRRNTEIVVSDPAASSHRTVAESRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52130g00001 208 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 208 IPR044810 GO:0003700
Trme52130g00001 208 FunFam WRKY transcription factor 14 87 - -
Trme52130g00001 208 SUPERFAMILY WRKY DNA-binding domain 180 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme52130g00001 208 ProSiteProfiles WRKY domain profile. 28 86 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme52130g00001 208 SUPERFAMILY WRKY DNA-binding domain 25 86 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme52130g00001 208 MobiDBLite consensus disorder prediction 1 39 - -
Trme52130g00001 208 SMART WRKY_cls 27 85 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme52130g00001 208 MobiDBLite consensus disorder prediction 93 130 - -
Trme52130g00001 208 Pfam WRKY DNA -binding domain 28 84 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme52130g00001 208 Pfam WRKY DNA -binding domain 189 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme52130g00001 208 Gene3D WRKY domain 175 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme52130g00001 208 ProSiteProfiles WRKY domain profile. 183 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme52130g00001 208 Gene3D WRKY domain 12 87 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme52130g00001 208 MobiDBLite consensus disorder prediction 69 172 - -
Trme52130g00001 208 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52130g00001 Trme-Chr52130 232 940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52130g00001 6 208 WRKY Transcription Factor Family AT2G03340 63.285 3.52e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme52130g00001 WRKY 2.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52130g00001 - - gmx:100127369 320.472