Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52127g00001 ATGGGAGATCCAGTTAAAATGATCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTTGGGATCATGAATCTGTGTCCCCGTCTTTAACAGATGTTAATTTAGAAATCAAATGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTCGAGAGATTCCCAAGATTCAAGGAACTGTTAATGTAGGTGGCACCCTTGCCTATGWTTCCCAATCTTCTTGRATACAAAGTRGAACAGTTCGAGATAATATACTYTTTGGCAAGCCAATGAACAAAACAAGATATGAGAATGCTATTAAAGCATGTGCCTTGGATGAGGATATCAATGATTTTAGTCACGGGGATCTTACAGAAATAGGCCAGAGAGGGATTAACCTAAGTGGAGGACAAAAACAAAGGATTCAACTAGCTCGAGCAGTCTACAAAGATGCTGATATCTATCTCCTCGATGACCCTTTCAGTGCAGTCGACG 625 0.3248 MGDPVKMIPEALSIMIQVKVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDHESVSPSLTDVNLEIKWGQKIAVCGPVGAGKSSLLYAILREIPKIQGTVNVGGTLAYXSQSSXIQSXTVRDNILFGKPMNKTRYENAIKACALDEDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYKDADIYLLDDPFSAVD 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52127g00001 208 Pfam ABC transporter 70 204 IPR003439 GO:0005524
Trme52127g00001 208 FunFam Multidrug resistance associated protein, putative 141 208 - -
Trme52127g00001 208 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524|GO:0016887
Trme52127g00001 208 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 208 IPR003439 GO:0005524
Trme52127g00001 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 208 IPR027417 -
Trme52127g00001 208 Gene3D - 56 208 IPR027417 -
Trme52127g00001 208 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52127g00001 Trme-Chr52127 1 742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52127g00001 70 208 Calmodulin-binding Proteins AT2G36910 32.680 1.91e-16 75.5