Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52097g00001 ACAGATAGTAAGGACTTTTGGTATCTTTTGCATGATGTTTATACAGGGAAAATGGTTCTGCCCTTTTTGCCACTGTCAATAGCATTTAAAGATGTGCAGTATTTTGTTGACACTCCTCCGGAGATGAAAAAACATGGTTCGAACGAGAAAAATCTACAATTGCTCTGCGATATCACGGGAGCCTTTAGACCAGGAATCCTTACTGCACTGATGGGAGTCAGTGGAGCAGGGAAGACAACACTCATGGATGTTCTTTCAGGAAGAAAAACTGGAGGAATCATTGAAGGAGATATAAGAATTGGAGGGTACCCTAAAGTGCAAATGACATTTGCAAGAGTTTCAGGTTACTGTGAGCAAAATGACATACATTCTCCATATATAACAGTTGAAGAATCTGTTCGATACTCAGCTTGGCTGCGGTTGCCGAGGGAGATTGATTCAGCAACAAAAGGGAAATTTGTGGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAGGATAGTTTAGTTGGCATTNCTGGCCAAAGTGGATTATCGACAGAGCAACGTAAAAGACTAACCATTGCAGTGGAGCTTGTCTCGAATCCATCAATAATTTTTATGGATGAACCTACATCAGGTTTGGATGCCCGAGCTGCAGCTGTTGTTATGCGCGCAGTGAAGAATGTTGTTGCCACTGGTAGGACCACGGTTTGCACTATACATCAGCCAAGCATTGATATATTTGAGACTTTTGATGAGGTAGTCA 751 0.4128 TDSKDFWYLLHDVYTGKMVLPFLPLSIAFKDVQYFVDTPPEMKKHGSNEKNLQLLCDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQMTFARVSGYCEQNDIHSPYITVEESVRYSAWLRLPREIDSATKGKFVEEVLETIELDDIKDSLVGIXGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVATGRTTVCTIHQPSIDIFETFDEVV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52097g00001 250 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 16 249 - -
Trme52097g00001 250 Pfam ABC transporter 57 207 IPR003439 GO:0005524
Trme52097g00001 250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 240 IPR027417 -
Trme52097g00001 250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 250 IPR003439 GO:0005524
Trme52097g00001 250 FunFam ABC transporter G family member 39 41 148 - -
Trme52097g00001 250 FunFam Uncharacterized protein 184 250 - -
Trme52097g00001 250 SMART AAA_5 64 247 IPR003593 GO:0016887
Trme52097g00001 250 Gene3D - 41 250 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52097g00001 Trme-Chr52097 1 940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52097g00001 161 239 Calmodulin-binding Proteins AT2G36910 37.975 3.86e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52097g00001 K08711 - gmx:100819411 423.32