Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52036g00001 ATGTCAGAACAAAATATTATTGGAAGTGGTGGATATGGCACGGTGTATCGAGTTGATGTCGATGGTTTAGGCTATGTTGCTGTGAAAAAGATATGGAATAACAAAAAGTTAGACGACAAACTCAGGAGTTCGTTTTGCGCTGAAGTTAAAATATTGAGCAATATTCGTCATAACAACATTGTGAGACTGTTGTGTTGTATCTCTAATGACGATTCTATGCTTCTTGTCTATGAGTATCTTGAAAAACATAGTCTAGACAAGTGGCTGCGCACGAAGAGTAAGTCATCGTCATCAACTTTCTCAGGTTCGGTACAGCCACATGTTGTTCTTGATTGGCCAAAGAGGTTGAAAATAGCTATTGGAGCTGCTCAAGGTTTGAGCTACATGCATCATGATTGCTCACCACCTATTATTCATAGAGATGTTAAAACAAGCAACATACTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGACTTGCTAGGATTTTAGTCAAGCCAGATGAACTTAACACAATGTCATCTGTGATTGGCTCATTTGGCTACATTGCTCCAGGTGAATGA 570 0.3877 MSEQNIIGSGGYGTVYRVDVDGLGYVAVKKIWNNKKLDDKLRSSFCAEVKILSNIRHNNIVRLLCCISNDDSMLLVYEYLEKHSLDKWLRTKSKSSSSTFSGSVQPHVVLDWPKRLKIAIGAAQGLSYMHHDCSPPIIHRDVKTSNILLDAQFNAKVADFGLARILVKPDELNTMSSVIGSFGYIAPGE 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52036g00001 189 Gene3D Transferase(Phosphotransferase) domain 1 1 188 - -
Trme52036g00001 189 ProSitePatterns Protein kinases ATP-binding region signature. 7 30 IPR017441 GO:0005524
Trme52036g00001 189 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Trme52036g00001 189 FunFam Os07g0541700 protein 92 181 - -
Trme52036g00001 189 SMART serkin_6 1 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52036g00001 189 ProSiteProfiles Protein kinase domain profile. 1 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52036g00001 189 Pfam Protein kinase domain 3 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52036g00001 189 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 187 - -
Trme52036g00001 189 SUPERFAMILY Protein kinase-like (PK-like) 4 187 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52036g00001 Trme-Chr52036 199 768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52036g00001 1 187 Receptor kinase-like Gene Family AT5G25930 62.434 1.52e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme52036g00001 Pkinase 5.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52036g00001 - - gmx:100820277 299.286