Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51991g00001 GCTTCTCGAGTAAGAGATGAGGAAGAGTTTCCTTATGGGCATATCTTGGATGCTGCAAACTTAAAAGTTTTTACTTGGGCAGAACTGAAATCAGCTACTAGAAATTTCCGTCCTGAAAATCTGTTAGGAGAGGGTGGGTTTGGTAAAGTATTCAAGGGTTTGATAAAGGAGGGAGCAGAATCAGAAAAAGGTGGGGGTTTGACTATAGCCATCAAGATATTGAATTCTCACAGTTCGCAAGGATTTGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTCGTCAAACTGTTGGGATTTGGGCATGAGGATCATAAGCTATTTCTCGTGTATGAATTTCAGCCCCGCGGTAGCTTGGATAACCACCTATTTGGAAGAGGTTCAAATGTTCGGCCACTTTCATGGGACAAAAGGCTGAAAGCATACACAGCCAAGTTATCAGACTTTGGCTTGGCCAAATCTGGTCCTTCTGATGATCACTCTCATGTATCAACACGGGTT 519 0.4335 ASRVRDEEEFPYGHILDAANLKVFTWAELKSATRNFRPENLLGEGGFGKVFKGLIKEGAESEKGGGLTIAIKILNSHSSQGFAEWQSEVNFLGRLSHPNLVKLLGFGHEDHKLFLVYEFQPRGSLDNHLFGRGSNVRPLSWDKRLKAYTAKLSDFGLAKSGPSDDHSHVSTRV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51991g00001 173 SUPERFAMILY Protein kinase-like (PK-like) 18 171 IPR011009 -
Trme51991g00001 173 ProSiteProfiles Protein kinase domain profile. 36 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51991g00001 173 ProSitePatterns Protein kinases ATP-binding region signature. 42 72 IPR017441 GO:0005524
Trme51991g00001 173 Pfam Protein tyrosine and serine/threonine kinase 40 132 IPR001245 GO:0004672|GO:0006468
Trme51991g00001 173 Gene3D Phosphorylase Kinase; domain 1 20 119 - -
Trme51991g00001 173 PANTHER OS01G0588500 PROTEIN-RELATED 147 173 - -
Trme51991g00001 173 FunFam Serine/threonine-protein kinase BIK1 4 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51991g00001 Trme-Chr51991 1 940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51991g00001 24 173 Receptor kinase-like Gene Family AT1G30570 40.761 6.52e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme51991g00001 PK_Tyr_Ser-Thr 4.2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51991g00001 - - gmx:100813304 246.899