Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51954g00001 GTTCAAGCTGTTTTACTGCTTTTGGGAGGACGAGATGCACCGGCAGGCATGCCTAAAGTTGAACAACGATTTGATCAAAGTATCAAGAGCATGGGCGATATTACAAGGCATCCAAATCTTTCACAAAGAATAGCCTCCTTGGTCCGGTATCGCGAAAAACGCAAGGATAGATGTTTTGAAAAGAAAATTAGATACACCGTGAGAAAAGAAGTGGCAGAAAGGTAA 225 0.4222 VQAVLLLLGGRDAPAGMPKVEQRFDQSIKSMGDITRHPNLSQRIASLVRYREKRKDRCFEKKIRYTVRKEVAER 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51954g00001 74 ProSiteProfiles CCT domain profile. 43 74 IPR010402 GO:0005515
Trme51954g00001 74 PANTHER GATA TRANSCRIPTION FACTOR 28 1 74 IPR045280 GO:0006355
Trme51954g00001 74 Pfam CCT motif 43 73 IPR010402 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51954g00001 1 74 Tify Gene Family AT3G21175 52.703 1.09e-18 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme51954g00001 CCT 9.8e-11 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51954g00001 - - vvi:100257426 110.923