Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5188g00001 ATGTGTATCTTGAGCATTGATCCATCTGTTCAAGACTTCTCTTTGATGACAAGGACAACATATGTTGAATTCAATCCATCAAAGTCCCGCGCCAAACTCCCTGATTTGTTTTCAAGAGATTATGGCCAGTTTCTCCGCGGATATGTGATACTCCAGGATCCAAAGAATAACCAAATCCAGGTGTCCATTGAGAAAAATAAAGATGAGATTTATTTTACTCGCGGTTGGTCCCGGTTAAGACATTTTTATGGTCTTATCTACGGTGGTTGGGTGACTATATTGTATAACAGCCCTGTTACTATTCACATCGAGGTTAGAAGTCTAACAGGGCATCAAGTGGCTTACCCACACAGTGATCCTCCTCGCAGGCTAATGCTGATTGACCAGATAGGTGAAGATGCCTCAAATGGGCTTGTTCCTCATTTCGTGGCGCCAACAAGTTTTTATCACGTCCTTGAAAAAACTCTCAACACAAGTGACTTAGAATCTGGGGTGTTGAAACTTTTTTGGAGTGGATTTTGTGAAAATGCATTGCCTCACAAAGATACTGGAATCACTTTGATGGATTGGATGGGGTTTACATGGAAATGTCATCTGCAACTCCAGGACAACAGCTGCATACTATATGGGGAGTGGAAGGCAATGTGCGAGGCACGCAATTTAACTGAGGGTTCTGTTGTAAAATTCGGTGTTACTAAGCCGAGTAATAATATTTTGGTCCATGTTAAGGTGTCTCATTTCCTTGGCGTGCGCACAACATTGGTTGCACCTAAAACTGCTGGGGGATACAAGGCATTTTACCAAGTGGATCACTACTATATGCTGTAA 828 0.4227 MCILSIDPSVQDFSLMTRTTYVEFNPSKSRAKLPDLFSRDYGQFLRGYVILQDPKNNQIQVSIEKNKDEIYFTRGWSRLRHFYGLIYGGWVTILYNSPVTIHIEVRSLTGHQVAYPHSDPPRRLMLIDQIGEDASNGLVPHFVAPTSFYHVLEKTLNTSDLESGVLKLFWSGFCENALPHKDTGITLMDWMGFTWKCHLQLQDNSCILYGEWKAMCEARNLTEGSVVKFGVTKPSNNILVHVKVSHFLGVRTTLVAPKTAGGYKAFYQVDHYYML 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5188g00001 275 Gene3D - 11 107 IPR015300 -
Trme5188g00001 275 SUPERFAMILY DNA-binding pseudobarrel domain 151 241 IPR015300 -
Trme5188g00001 275 Pfam B3 DNA binding domain 153 240 IPR003340 GO:0003677
Trme5188g00001 275 Gene3D - 143 247 IPR015300 -
Trme5188g00001 275 SUPERFAMILY DNA-binding pseudobarrel domain 23 106 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5188g00001 Trme-Chr5188 382 1547 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme5188g00001 B3 2.8e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5188g00001 - K05008 tpra:123917148 274.633