Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51882g00001 AGGTCTTTCACTTATGAAGAATTGTCCTCTGCTACGAACAATTTTAGCAGCTCTGCTCAAGTCGGACAAGGGGGATATGGCAAAGTATATAAAGGTATTATTTCTGATGGCACTGCTGTTGCTATAAAACGCGCACAAGAGGGATCACTGCAAGGCGAAAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTACATCATCGCAACCTTGTGTCTCTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATATATGCCAAATGGAACACTAAGGGATCACCTTTCTGTTACAGCAAAAGAACCTTTGACTTTTATTATGAGATTGAAGATTGCATTAGGGTCAGCTAAAGGTCTCATGTATCTACACAACGAAGCWGATCCTCCAATATTTCATCGAGATGTCAAGGCCAGCAACATATTATTGGACTCTAAGCTCTCTGCAAAAGTGGCTGATTTCGGACTTTCCCGGCTTGCCCCAGTTCCAGATATGGAAGGGATTGTGCCTGGTCATGTATCTACTGTGGTAAAGGGGACACCGGTAAGGCTTTCATAA 570 0.4211 RSFTYEELSSATNNFSSSAQVGQGGYGKVYKGIISDGTAVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSVTAKEPLTFIMRLKIALGSAKGLMYLHNEADPPIFHRDVKASNILLDSKLSAKVADFGLSRLAPVPDMEGIVPGHVSTVVKGTPVRLS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51882g00001 189 ProSiteProfiles Protein kinase domain profile. 15 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51882g00001 189 Pfam Protein tyrosine and serine/threonine kinase 18 163 IPR001245 GO:0004672|GO:0006468
Trme51882g00001 189 FunFam Leucine-rich repeat protein kinase family protein 1 90 - -
Trme51882g00001 189 Gene3D Transferase(Phosphotransferase) domain 1 91 187 - -
Trme51882g00001 189 SUPERFAMILY Protein kinase-like (PK-like) 2 184 IPR011009 -
Trme51882g00001 189 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 185 - -
Trme51882g00001 189 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Trme51882g00001 189 SMART serkin_6 15 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51882g00001 189 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Trme51882g00001 189 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51882g00001 Trme-Chr51882 2 659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51882g00001 1 185 Receptor kinase-like Gene Family AT5G01950 72.432 4.21e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trme51882g00001 PK_Tyr_Ser-Thr 2.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51882g00001 - - gmx:100799888 330.102