Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51713g00001 ACTGATTCAAAAGAGAATGATAAACTATCTCTCTGGTCAGATGCTGTACAACAGTTGTCTAAGGAAGTCCAAAGTTGGCCTTATGATTTTCTTCAATCACAAGATTACTTTCCACCCAATCAAAGGGGAGCAGTATTTGGAAGATTATTAGTCCAAGATAGGTACTTCAAAGGAGGGAGATTTCAATGTACTAATGCTTATTTGGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTAATGCCAAAGGATACTTTAAAATAAATAATGTTGTGCCAGGTGATTATAATTTGTATGGTTGGGTCCCTGGATTTATTGGTGATTACAAATATAATGGTACAATCACCATCACACCAGGAGGAATCATAAACTTAAATTCACTTGTATATAATCCTCCAAGAAATGGACCAACCATTTGGGAAATTGGGATCCCAGATCGTTTAGCTTCGGAATTTCATGTACCTGATCCATACCCTAGTCTCATGAACAAATTATACGTCGAACAACGCAAAGACAAGTTAGTCCAAAACTCTG 571 0.3835 TDSKENDKLSLWSDAVQQLSKEVQSWPYDFLQSQDYFPPNQRGAVFGRLLVQDRYFKGGRFQCTNAYLGLALPGDAGSWQRESKGYQFWTQANAKGYFKINNVVPGDYNLYGWVPGFIGDYKYNGTITITPGGIINLNSLVYNPPRNGPTIWEIGIPDRLASEFHVPDPYPSLMNKLYVEQRKDKLVQNS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51713g00001 190 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 188 - -
Trme51713g00001 190 Gene3D - 38 139 - -
Trme51713g00001 190 FunFam Rhamnogalacturonate lyase B 38 137 - -
Trme51713g00001 190 CDD RGL4_M 41 140 IPR029413 -
Trme51713g00001 190 Pfam Polysaccharide lyase family 4, domain II 65 135 IPR029413 -
Trme51713g00001 190 SUPERFAMILY Starch-binding domain-like 36 139 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51713g00001 Trme-Chr51713 1 944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51713g00001 1 188 Polysaccharide Lyase AT4G38030 55.263 3.41e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51713g00001 K18195 - gmx:100776664 301.212