Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5166g00001 CAAGATCCTCGTATGCCTGCAAGTCTCATCAGACTTCATTTTCATGATTGCTTTGTTCAAGGTTGTGATGCATCAGTTTTGTTGAACAACACTGCTACTATTGTGAGTGAACAAGATGCTGCTCCAAATAACCAATCCTTAAGAGGATTCAATGTTGTGAATAGGATTAAACTAGCCGTGGACAATGCTTGTCCTAATCTAGTTTCTTGTGCTGATATTCTTACACTTGCTGCCGAAAAATCTTCTGTTATGGTACATATGTTTAACTAA 270 0.3778 QDPRMPASLIRLHFHDCFVQGCDASVLLNNTATIVSEQDAAPNNQSLRGFNVVNRIKLAVDNACPNLVSCADILTLAAEKSSVMVHMFN 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5166g00001 89 SUPERFAMILY Heme-dependent peroxidases 2 85 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trme5166g00001 89 ProSiteProfiles Plant heme peroxidase family profile. 1 89 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme5166g00001 89 Gene3D - 1 88 - -
Trme5166g00001 89 Pfam Peroxidase 2 84 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme5166g00001 89 PRINTS Plant peroxidase signature 48 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme5166g00001 89 PRINTS Plant peroxidase signature 67 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme5166g00001 89 PRINTS Plant peroxidase signature 8 28 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme5166g00001 89 PRINTS Haem peroxidase superfamily signature 6 20 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme5166g00001 89 PRINTS Haem peroxidase superfamily signature 68 85 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme5166g00001 89 PANTHER PEROXIDASE 72-RELATED 1 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5166g00001 Trme-Chr5166 759 1565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5166g00001 1 84 Peroxidase AT1G44970 61.905 3.55e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5166g00001 K00430 - gmx:112997600 139.043