Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5165g00001 CTTACATTTACCAACCATGGTGAAATTGGGTTGATTTGTAACCTTACGAATAGCTATTGTTTGGTTGGTAGTGGAGGTTCCGAAAACTTCTACAGTTCAATTGAGGCTGAATTAGAAGATGTTATCCCTATCATCAAAACCTCCATTGGCGATAGTAGTGTTGGTCGTTATTGTATTGGCTTTACTTACCTCCTGGCCGATCCACGAATTATCGGGGTTCCCTTGCCCTGTAAACCCGGAGGGTTAACACAAAAAATAGGCGGTGTGTGGCACCCGTGCGCTGAAAACTACACATGGTCATGGTGGGACAGGTGTGTGCCTCGCTGGGTCGCAGGAAACAAAAATGGACTTCTCTTGCCCCATACAACCACACTTGAAGTTCCCCTTCCTCAAGAAACAAACCCTATTGTTTAG 414 0.4541 LTFTNHGEIGLICNLTNSYCLVGSGGSENFYSSIEAELEDVIPIIKTSIGDSSVGRYCIGFTYLLADPRIIGVPLPCKPGGLTQKIGGVWHPCAENYTWSWWDRCVPRWVAGNKNGLLLPHTTTLEVPLPQETNPIV 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5165g00001 137 Gene3D - 1 72 - -
Trme5165g00001 137 SUPERFAMILY Pentein 2 66 - -
Trme5165g00001 137 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 2 60 IPR002769 GO:0042256|GO:0043022
Trme5165g00001 137 Pfam eIF-6 family 2 60 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5165g00001 Trme-Chr5165 82 1376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5165g00001 1 60 Eukaryotic Initiation Factors Gene Family AT3G55620 60.656 1.14e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5165g00001 K03264 - cpap:110825086 82.4185