Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51579g00001 GTGAGGAAACCATATACTATCACTAAACAAAGGGAGAAATGGACTGATGAAGAGCATCAAAAGTTTCTCGAGGCTTTGAAATTGTATGGTCGAGGCTGGCGTCAAATTGAAGAACATATAGGATCCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGATGGCAGTGCTGAAAGCTCTATTCAGCCAATTGACATACCTCCTCCCCGGCCGAAAAGGAAACCCCTTCATCCATACCCTCGCAAATCCATCGACTCTTTCAAAGGACAGTCGGCCCC 308 0.4578 VRKPYTITKQREKWTDEEHQKFLEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESSIQPIDIPPPRPKRKPLHPYPRKSIDSFKGQSAP 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51579g00001 103 CDD SANT 13 56 IPR001005 -
Trme51579g00001 103 Gene3D - 13 60 - -
Trme51579g00001 103 NCBIfam myb-like DNA-binding domain, SHAQKYF class 9 58 IPR006447 GO:0003677
Trme51579g00001 103 PANTHER SWI/SNF COMPLEX-RELATED 1 96 - -
Trme51579g00001 103 MobiDBLite consensus disorder prediction 60 103 - -
Trme51579g00001 103 Pfam Myb-like DNA-binding domain 11 54 IPR001005 -
Trme51579g00001 103 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 60 IPR017930 -
Trme51579g00001 103 ProSiteProfiles SANT domain profile. 9 60 IPR017884 -
Trme51579g00001 103 SMART sant 10 58 IPR001005 -
Trme51579g00001 103 SUPERFAMILY Homeodomain-like 5 59 IPR009057 -
Trme51579g00001 103 FunFam protein REVEILLE 6 isoform X1 13 61 - -
Trme51579g00001 103 ProSiteProfiles Myb-like domain profile. 6 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51579g00001 Trme-Chr51579 193 945 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme51579g00001 Myb_DNA-binding 6.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51579g00001 - - vum:124836796 171.014