Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51471g00001 GGCCGTGGTCGTAGAAGAGCAGGCCGTCGTGAAGAAGAAGAAAAATGGGTTCCAGTAACAAAACTCGGCCGTCTCGTCAAAGAAGGTAAAATCCGTAGCCTTGAACAGATCTACCTTCATTCTCTTCCAATCAAAGAGCATCAAATCATCGACACACTCGTTGGTCCAACATTGAAAGATGAAGTGATGAAAATCATGCCGGTTCAGAAACAAACTCGAGCCGGTCAAAGAACCCGGTTCAAAGCATTTGTTGTAGTTGGTGATAACAATGGTCATGTTGGTTTAGGTGTTAAGTGTAGTAAAGAAGTTGCTACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAACTGTTCCTTGTAAGGTTACTGGTAAATGTGGTTCTGTTACTGTTAGAATGGTTCCTGCTCCTAGAGGTAGTGGTATTGTTGCTGCTAGGGTTCCTAAGAAGGTTTTGCAATTTGCTGGGATTGATGATGTTTTTACTTCTTCCAGAGGATCTACTAAGACTCTTGGCAATTTTGTTAAG 582 0.3591 GRGRRRAGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51471g00001 194 Pfam Ribosomal protein S5, N-terminal domain 58 105 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trme51471g00001 194 FunFam 40S ribosomal protein S2 15 111 - -
Trme51471g00001 194 ProSiteProfiles S5 double stranded RNA-binding domain profile. 58 104 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trme51471g00001 194 PANTHER RIBOSOMAL S SUBUNIT 7 192 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trme51471g00001 194 SUPERFAMILY Ribosomal protein S5 domain 2-like 135 194 IPR020568 -
Trme51471g00001 194 NCBIfam 30S ribosomal protein S5 11 194 IPR005711 GO:0003735|GO:0006412|GO:0015935
Trme51471g00001 194 Gene3D - 15 110 - -
Trme51471g00001 194 FunFam 40S ribosomal protein S2 127 194 - -
Trme51471g00001 194 Pfam Ribosomal protein S5, C-terminal domain 142 194 IPR005324 GO:0003735|GO:0005840|GO:0006412
Trme51471g00001 194 Gene3D - 128 194 IPR014721 -
Trme51471g00001 194 SUPERFAMILY dsRNA-binding domain-like 54 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51471g00001 Trme-Chr51471 351 932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51471g00001 12 194 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 79.235 3.65e-98 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51471g00001 K02981 - gmx:100797105 302.367