Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51464g00001 ATGGACACTGATTCAAATCCGGGGCAATTATCAGTTGCCTTTGCTAATGGTGCTCGATTATCAGTTGCCATTGCTAATGGTTCTATGAACTTCGATGATGCGATTCGTCAACAGTTTGATCTAGTTCGTCGATATAATCATTATGGTGAACATAATCATAATGAACCTAGCAATGTTGATGTTTCTGCATTGAATAAGAACAAGACATCAGAGAAAAAGGATAATGTTGAAAAGTGTTGTGATAACAGTGATAGAGGTTTCTCTGATTGTAATATTTGTTTAGATTTGGCTAAGGAACCTGTTGTGACTTTTTGTGGTCATTTGTTTTGTTGGCCATGTTTGTATAGATGGTTGTATTTAAGATCTTCTGGAACCAAAGATTGTCCTGTTTGCAAGGGACAAGTTAGTGATAAGAATGTTATTCCTATATATGGTGGCGGGAATAATGATGAGATTCGTAATGAGGATTCGAGCTCTGGTACTCCTAAAATTCCTTGCAGACCTAATGCAAAGCGTGTCTCGTGGGATCCTGAAGCGAGGCAAATAAGAAGTGTGAGAGCCAGGCGTGCTTGA 573 0.3874 MDTDSNPGQLSVAFANGARLSVAIANGSMNFDDAIRQQFDLVRRYNHYGEHNHNEPSNVDVSALNKNKTSEKKDNVEKCCDNSDRGFSDCNICLDLAKEPVVTFCGHLFCWPCLYRWLYLRSSGTKDCPVCKGQVSDKNVIPIYGGGNNDEIRNEDSSSGTPKIPCRPNAKRVSWDPEARQIRSVRARRA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51464g00001 190 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 57 179 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trme51464g00001 190 MobiDBLite consensus disorder prediction 147 190 - -
Trme51464g00001 190 ProSitePatterns Zinc finger RING-type signature. 105 114 IPR017907 -
Trme51464g00001 190 SMART ring_2 90 131 IPR001841 -
Trme51464g00001 190 Pfam Zinc finger, C3HC4 type (RING finger) 90 131 - -
Trme51464g00001 190 SUPERFAMILY RING/U-box 89 144 - -
Trme51464g00001 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 152 IPR013083 -
Trme51464g00001 190 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51464g00001 71 173 C3H Transcription Factor Family AT3G58030 56.311 1.22e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51464g00001 K10666 - tpra:123922773 174.866