Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5140g00001 ATGGGAGCTCCTAAGCAGAAGTGGACTGCAGAAGAAGAAGCGGCGCTGAAAGCTGGAGTTGTCAAACACGGGTCAGGAAAATGGCGCACTATACTTACTGATCCCGAGTTCAGTTCCATTTTGCGTACGCGGTCCAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACCGCAGTATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAACCTTGCACTTCCAGCCCCCAAAACTAACAATAACCAATTGACCGTGAGTAAAGTAGTTCAACGTGAAGACATTCTCGATGTTAAGCCCCTAGCAGTTTCTAGCGGAACATTGCATTCTCCGAATTCAAAAGAACAAGTATCAAGGTTCAAGAACTTTCAGTTAAATATATCCGCCATTTATTATCAATAG 414 0.4396 MGAPKQKWTAEEEAALKAGVVKHGSGKWRTILTDPEFSSILRTRSNVDLKDKWRNINVTAVWGSRQKAKLALKKNLALPAPKTNNNQLTVSKVVQREDILDVKPLAVSSGTLHSPNSKEQVSRFKNFQLNISAIYYQ 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5140g00001 137 SMART sant 4 59 IPR001005 -
Trme5140g00001 137 Gene3D - 2 59 - -
Trme5140g00001 137 PANTHER SINGLE MYB HISTONE 4 1 111 IPR044597 GO:0003691
Trme5140g00001 137 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trme5140g00001 137 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Trme5140g00001 137 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Trme5140g00001 137 FunFam Telomere repeat-binding factor 1 2 58 - -
Trme5140g00001 137 CDD SANT_TRF 6 57 - -
Trme5140g00001 137 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5140g00001 Trme-Chr5140 1250 1869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5140g00001 1 90 Single Myb Histone (SMH) Gene Family AT5G67580 73.333 3.96e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme5140g00001 Myb_DNA-binding 3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5140g00001 K09422 - vum:124826323 197.593