Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5139g00001 ATGAGTTCTGATCAACCACTGCTTTCCGAACCAGATCTTGTTCCTCCAGTCATTCATCATCGCCACCGGAAATCCGGATCCCGCACTTCCTTCTTTGAGGCTGCCGCTGCCGCAGAATCTTTTCCGACATCCGACCACCATAGGGAAGTTGTGTTGGCGAAAGATTGCAGCTTCCACTCTGCATTTTGCAATAATAACAACAGTGGCAGCATTGGCATCTCATCATCCTCTTTAACAGAGGCACAAAACCCTGATTCGGAGTTTCGTTTGGAATGCCCCACGCGGGAAAGGGGACGCCTGCGATCCTGGGGTGCAATGGAACTGCATGATGCTAATACTGCGCCCTTTGAAATTTCAACAGCTTCTGCAGTAACATCAGCTCCATCTCGCAGGATTCGTCATAAAAGTGTGCAGTTTGATGAACAAATTTTACATGATGATAATGCTAGGTTGATCTATATAAATGATCCTAAGAGAACTAATGATAAGTATGAGTTTACTGGGAATGAGATCCGAACTAGTAGATATACTTTTATCACATTCTTGCCTAAGAATTTATTTATTCAGTTTCATAGGGTTGCTTATTTGTATTTCCTTGCTATTGCTGCACTCAATCAGCTTCCTCCCTTAGCTGTATTTGGGAGGACAGTGTCCCTTTTTCCGCTTTTGTTTGTTCTTTGTGTTACTGCTATTAAGGATGGGTATGAGGATTGGAGGAGACATAGGTCCGATAACAATGAGAACAATCGTGAGTCTTTGGTTCTTCAGTCCAGTGATTTCCGGTCCAAGGTATGGAAAAAGATTCAGGCTGGTGAGGTCGTTAAGATCTTTGCTGATGAGACCATTCCTGCTGATATGGTTTTGTTGGGTACAAGTGATCCGAGTGGGCTTGCCTATATTCAGACAATGAATTTGGACGGAGAATCAAATTTGAAGACGAGGTATGCCAAGCAGGAAACGACTTCTGCAGTATCTTCGGAGGTTTGTGATATTGCTGGGATTATTAGATGTGAGCAGCCAAACCGGAATATTTATGAGTTCACAGCTAATATGGAGTTCAATGGAATTAAGTTTTCCCTTAGCCAGTCAAACATTGTCCTGCGAGGTTGCCAGCTGAAGAACACGGATTGGATAATTGGTGTTGTTGTTTATGCAGGACAGGAAACAAAAGCCATGTTGAACAGTGCGGCTTCTCCTTCCAAGAGAAGCCGACTGGAAGGTTATATGAATAGAGAAACCCTTTGGTTGTCAATTTTTCTTTTTATCATGTGTTTGGTTGTGGCCCTTGGGATGTGTCTTTGGCTGGTACGTCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAAGATACATCAACAAAGGCCCGGAATATGGAAAGAAATATAAGTATTATGGGATACCAATGGAAGCGTTTTTCTCCTTTTTGAGTTCTGTTATAGTGTTCCAGATAATGATACCCATATCTCTTTACATCACAATGGAGTTGGTTCGATTGGGTCAGTCATACTTCATGATTGAAGACATGCATATGTATGACGCTAGTTCTGGATCAAGGTTTCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTATGTATTTTCAGACAAGACAGGAACACTAACAGAAAACAAGATGGAATTCCGTAGGGCTAGCGTACATGGAGATAATTATGGGAGCTCCTTGCTTGCTGCTGATGATAGTTCAG 1723 0.4214 MSSDQPLLSEPDLVPPVIHHRHRKSGSRTSFFEAAAAAESFPTSDHHREVVLAKDCSFHSAFCNNNNSGSIGISSSSLTEAQNPDSEFRLECPTRERGRLRSWGAMELHDANTAPFEISTASAVTSAPSRRIRHKSVQFDEQILHDDNARLIYINDPKRTNDKYEFTGNEIRTSRYTFITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDNNENNRESLVLQSSDFRSKVWKKIQAGEVVKIFADETIPADMVLLGTSDPSGLAYIQTMNLDGESNLKTRYAKQETTSAVSSEVCDIAGIIRCEQPNRNIYEFTANMEFNGIKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLEGYMNRETLWLSIFLFIMCLVVALGMCLWLVRHKNQLDTLPYYRKRYINKGPEYGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDMHMYDASSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVHGDNYGSSLLAADDSS 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5139g00001 574 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 146 566 - -
Trme5139g00001 574 Pfam Phospholipid-translocating ATPase N-terminal 152 217 IPR032631 -
Trme5139g00001 574 Pfam E1-E2 ATPase 254 497 - -
Trme5139g00001 574 ProSitePatterns E1-E2 ATPases phosphorylation site. 541 547 IPR018303 -
Trme5139g00001 574 SUPERFAMILY HAD-like 526 562 IPR036412 -
Trme5139g00001 574 Gene3D - 228 394 - -
Trme5139g00001 574 NCBIfam phospholipid-translocating P-type ATPase 166 567 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trme5139g00001 574 Gene3D - 523 535 - -
Trme5139g00001 574 Gene3D - 549 560 IPR023299 GO:0000166
Trme5139g00001 574 SUPERFAMILY Calcium ATPase, transmembrane domain M 166 533 IPR023298 -
Trme5139g00001 574 SUPERFAMILY Calcium ATPase, transduction domain A 250 391 IPR008250 -
Trme5139g00001 574 Gene3D - 536 548 IPR023214 -
Trme5139g00001 574 MobiDBLite consensus disorder prediction 1 25 - -
Trme5139g00001 574 NCBIfam HAD-IC family P-type ATPase 472 563 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5139g00001 Trme-Chr5139 71 1793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5139g00001 129 563 Primary Pumps ATPases AT5G04930 61.086 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5139g00001 K14802 - gmx:100789830 883.634