Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51377g00001 ATGCTATATCTTCATCAAGACTCTAGATTAAGAATCATCCATAGAGACTTGAAAACAAGCAATATTCTTCTTGATAGTGATATGAATCCAAGAGTATCAGATTTTGGTCTAGCCAGAACATTTAGAGGAGATCTAGACGAGTCCAATACAAATAGATTGATGGGAACATATGGTTATATGCCACCTGAATATGCTGTGCATGGATCATTTTCAATTAAATCCGATGTTTTTAGCTTTGGTGTAATTGTTTTGGAG 255 0.3451 MLYLHQDSRLRIIHRDLKTSNILLDSDMNPRVSDFGLARTFRGDLDESNTNRLMGTYGYMPPEYAVHGSFSIKSDVFSFGVIVLE 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51377g00001 85 ProSiteProfiles Protein kinase domain profile. 1 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51377g00001 85 FunFam Os07g0541700 protein 1 56 - -
Trme51377g00001 85 SUPERFAMILY Protein kinase-like (PK-like) 1 85 IPR011009 -
Trme51377g00001 85 Pfam Protein kinase domain 3 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51377g00001 85 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 85 - -
Trme51377g00001 85 ProSitePatterns Serine/Threonine protein kinases active-site signature. 12 24 IPR008271 GO:0004672|GO:0006468
Trme51377g00001 85 Gene3D Transferase(Phosphotransferase) domain 1 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51377g00001 Trme-Chr51377 93 431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51377g00001 1 85 Receptor kinase-like Gene Family AT4G23230 71.765 8.51e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme51377g00001 Pkinase 7.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51377g00001 - - tpra:123913214 174.096