Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51374g00001 ATGCTTGGACAGTTGAAATGCTTAGAAACATTGAATCTCTCGCATAATAATCTTTCTGGTACCATTCCCTCGAGTTATGGAGAGATGTTAAGCTTGACAATTGTCGATATATCATACAACCAGTTGGAGGGTCCGATTCCAAACATTCTAGCCTTCCAAAACGCTCCAATTGAAGCACTAAGCAACAACAAAGGCTTGTGTGGTAATGCCTCTGGGCTTGAGCTTTGTTCAACATCTAATGGAAACTCTCATAATCATAAGACTAACAAAAATTTGGTGGTAATTTTACCACTCATTCTAGGCACTGTATTGTTAACATTATTTCTTTATGGGCTTTCATATGTCCTATGTCGAATGAAAGAGTACAAGGTTGCAGATGAATCACATGTTGAAAATCTATTTACAATATGGAGTTTTGACGGAAAAATGGTGTATGAGAACATAATCGATGCCACAGAAGAGTTTGACAACAAGCATCTGATTGGAGTTGGAGGACATGGAAGTGTTTACAAAGCAGAGTTGCTTACGGGACAAATTGTAGCTGTGAAGAAACTCCACTCATTACAAAATGAAGAAATGTCAAATCTAAAAGCTTTTGCAAGTGAGATTCAAGCTTTAACAGAAATCCGACATCGAAACTGTGAAGTTATATGGATATTGCTCCCATCCATTGCACTCATTTTTGGTTTATGA 693 0.3737 MLGQLKCLETLNLSHNNLSGTIPSSYGEMLSLTIVDISYNQLEGPIPNILAFQNAPIEALSNNKGLCGNASGLELCSTSNGNSHNHKTNKNLVVILPLILGTVLLTLFLYGLSYVLCRMKEYKVADESHVENLFTIWSFDGKMVYENIIDATEEFDNKHLIGVGGHGSVYKAELLTGQIVAVKKLHSLQNEEMSNLKAFASEIQALTEIRHRNCEVIWILLPSIALIFGL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51374g00001 230 Gene3D Ribonuclease Inhibitor 1 80 IPR032675 -
Trme51374g00001 230 ProSiteProfiles Protein kinase domain profile. 155 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51374g00001 230 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Trme51374g00001 230 SUPERFAMILY L domain-like 2 68 - -
Trme51374g00001 230 Gene3D Phosphorylase Kinase; domain 1 117 217 - -
Trme51374g00001 230 SUPERFAMILY Protein kinase-like (PK-like) 135 213 IPR011009 -
Trme51374g00001 230 PANTHER LEUCINE RICH REPEAT KINASE 2 1 213 - -
Trme51374g00001 230 FunFam Leucine-rich repeat receptor protein kinase MSP1 118 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51374g00001 Trme-Chr51374 173 865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51374g00001 2 48 Receptor kinase-like Gene Family AT4G08850 46.809 5.05e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme51374g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51374g00001 - - tpra:123922968 301.597