Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme51359g00001 | ATGGACGAAGATCAAGAAAGTGAGTTATCAAGTGAAATTCCATCTGTGGACTCTTTAGTTAATGACTTGACTTCTCAAATGGCAAGGTTCCAACTCTTGCAAGTACCAACCAAAAAGCCACCCGGACTCACTCAGGAGGCGCTGGACTGTTTACATGTTAAAGTTTTTAGCAGCAGTGAGACCTCATCAGAATCCAGGGCACTGCAGGATTGTGGGATATGCTTGGAATCTTTCACCGACGGAGATAAACTAATCCATTTGCAATGTGGACATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCAGTTGTGGAGACTGTCCATTCTGTCGAAGATGTATAGTTGTGAATAGTCAGTCACCTTCCATAAAATGA | 378 | 0.4259 | MDEDQESELSSEIPSVDSLVNDLTSQMARFQLLQVPTKKPPGLTQEALDCLHVKVFSSSETSSESRALQDCGICLESFTDGDKLIHLQCGHKFHSACLDPWIRSCGDCPFCRRCIVVNSQSPSIK | 125 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme51359g00001 | 125 | PANTHER | SI:CH211-59O9.10 | 6 | 118 | - | - | |
| Trme51359g00001 | 125 | SMART | ring_2 | 71 | 111 | IPR001841 | - | |
| Trme51359g00001 | 125 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 116 | IPR013083 | - | |
| Trme51359g00001 | 125 | Pfam | Ring finger domain | 70 | 112 | IPR001841 | - | |
| Trme51359g00001 | 125 | ProSiteProfiles | Zinc finger RING-type profile. | 71 | 112 | IPR001841 | - | |
| Trme51359g00001 | 125 | SUPERFAMILY | RING/U-box | 57 | 118 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme51359g00001 | 15 | 116 | C3H Transcription Factor Family | AT1G49850 | 54.902 | 1.82e-33 | 115 |