Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5132g00001 TTTGCTGATGTTCTAGAGTTATGGCCTTTTACTCTTGATGAATTTGTTCAAGCATTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTGTTCTTAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAGTGAACCAGAATGGAGCTGCTAATCCTGCCGGTGGCCATCCAGAGATTGTGGAAGGAGGAAGAAGTGGTGAAGATGTCATTTCTACACTCCGTAATGGTTCAGCAGCTGTAAGTGCAGTGGCAAAAATGCAAGAGAAAGGTCTATTAGCTCCTCGAAGATCAAGACATAGGTTAACTCCAGGAACCGTTAAATTTGCAGCATTTCATGTTCTCTCTCTTGAGGGCAGCAAGGGTTTGAATGTACTAGATCTTGCAGAAAAGATTCAGAAATCTGGTCTTCGGGACTTGACAACAAGCAAGACACCTGAAGCATCGATTTCGGTTGCTTTGACTAGAGATGGCAAACTTTTCGAAAGAATAGCTCCATCAACATATCGTGTACGAACCGCATTTAGAAAGGATCCTGTTGATGCTGAGGCCATTCTTTCAGAAGCAAGAAAGAAAATCCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCCGATGATGTTGAAAGAGAAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGACGATGATTTGGTAAATCCTTCAAGTGGAAACCAAAATACAGAACAGTATCATGATATGAATGTTTCCTCAGTAAATGTGAACGAAAATTCGGGCCATGAAGTAGACCTTATTCAAAATGAGCTTGATACTGATCTGCCTTGTTTTCTTGAGAATGGTTCCACTTCTAAGGATGTTGATCTTCCCAGTTCTGTCACCATACAACCCGTTGCTTTTGAAGATCTAAATACCGGAAAACTTGATGACAATAATATGGAAATTGATGAAACCAAGTCTGGAGAATCATGGGTTCAAGGGCTTACCGAAGGAGAATATTCCGATCTTAGTGTAGAAGAGCGTCTAAATGCACTTGTTGCATTGGTTGGGGTGGCAAATGAAGGAAATTCAGTTCGTATTGTTCTTGAGGATCGATTGGAAGCAGCGAATGCTCTGAAAAAGCAAATGTGGGCAGAAGCACAAATAGATAAAGTTCGTCTAAAAGATGATTATATTAGTAAATTAGATTTCCCGCTGCTTGCTGGAAATAAAATTGAAACACAAGAGGGAAACCAAAGCCCATTGCTCGACATCAATATTAACAACATTAAGAATGAAGCTTCACCCAGCACTGCAGAAAACCAAAAAGGAGCTTCTTCTGCACAAAGCCTACTTATTGAAAAGCCATCAACAGTTCAAGATTTCGGCACAGGCACAGGTCCAGATACCTTTCA 1415 0.4021 FADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAVLKVIIKDIEDVARTPSTGLGVNQNGAANPAGGHPEIVEGGRSGEDVISTLRNGSAAVSAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLNVLDLAEKIQKSGLRDLTTSKTPEASISVALTRDGKLFERIAPSTYRVRTAFRKDPVDAEAILSEARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDDDLVNPSSGNQNTEQYHDMNVSSVNVNENSGHEVDLIQNELDTDLPCFLENGSTSKDVDLPSSVTIQPVAFEDLNTGKLDDNNMEIDETKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSVRIVLEDRLEAANALKKQMWAEAQIDKVRLKDDYISKLDFPLLAGNKIETQEGNQSPLLDININNIKNEASPSTAENQKGASSAQSLLIEKPSTVQDFGTGTGPDTF 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5132g00001 471 MobiDBLite consensus disorder prediction 213 252 - -
Trme5132g00001 471 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 74 463 IPR044977 GO:0006357
Trme5132g00001 471 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 327 370 IPR028942 -
Trme5132g00001 471 Pfam HB1, ASXL, restriction endonuclease HTH domain 115 183 IPR007759 GO:0006355
Trme5132g00001 471 MobiDBLite consensus disorder prediction 435 471 - -
Trme5132g00001 471 MobiDBLite consensus disorder prediction 53 73 - -
Trme5132g00001 471 ProSiteProfiles DDT domain profile. 1 44 IPR018501 -
Trme5132g00001 471 SMART testlast3 1 44 IPR018501 -
Trme5132g00001 471 MobiDBLite consensus disorder prediction 216 239 - -
Trme5132g00001 471 ProSiteProfiles HARE-type HTH domain profile. 115 184 IPR007759 GO:0006355
Trme5132g00001 471 Pfam DDT domain 1 41 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5132g00001 Trme-Chr5132 1 2126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5132g00001 1 417 Homeobox Transcription Factor Family AT1G28420 55.745 1.27e-150 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trme5132g00001 HARE-HTH 9.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5132g00001 - - psat:127081735 738.028