Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51319g00001 ATGTCATCAGAGGTTACTTTACGAGATGTGCCTCCGGAAGCTTTCAAGGCTATGCTTGACTTTTTTTATGATGGGCAATTGAATGAGGAAATTATTGATTCTGGCTCTTTGTTGCTCCAACTCCTTCTATTGGCTGATCGATTCGGAGTGACATTTCTTCACCAAGAATGCTGCAAAATGCTTTTAGAATGCCTCTCACAGGTAGTTGGGGATGAAGTTTCTCTTTTGGGTGAAGGACTCCGTATGTCCACTCCTTCAGGTGGTTTCTTCAATCCCGTCATGCAGACTTGTTAA 294 0.4286 MSSEVTLRDVPPEAFKAMLDFFYDGQLNEEIIDSGSLLLQLLLLADRFGVTFLHQECCKMLLECLSQVVGDEVSLLGEGLRMSTPSGGFFNPVMQTC 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51319g00001 97 Gene3D Potassium Channel Kv1.1; Chain A 1 76 IPR011333 -
Trme51319g00001 97 SUPERFAMILY POZ domain 3 63 IPR011333 -
Trme51319g00001 97 PANTHER OS05G0345500 PROTEIN 2 67 - -
Trme51319g00001 97 Pfam BTB/POZ domain 3 63 IPR000210 GO:0005515
Trme51319g00001 97 CDD BTB_POZ_ZBTB_KLHL-like 2 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51319g00001 Trme-Chr51319 46 649 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trme51319g00001 BTB 6.7e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51319g00001 - - lja:Lj5g3v0279120.1 115.931