Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51270g00001 ATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAGGAGAATGATGTTCTTCTCCTCGGTGATGGTCCATGGCCGGAATTTGTAAATAGTGTATGGTGTATCAAGATACTTTCCCCTCAAGAAGTGCAACAAATGGGGAACAATGGTCTAGAGCTTCTGAACTCAGCTCCAACTCAGAGGCTCTCCAATGGAATCTGTGATGACTACACCGGCCGCGAGGACTCAAATTTAAGCACCGGGTTAACAACTGTGGGGTCTTTAGACTACTGA 303 0.4686 MFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSAPTQRLSNGICDDYTGREDSNLSTGLTTVGSLDY 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51270g00001 100 Gene3D - 1 57 - -
Trme51270g00001 100 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 57 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme51270g00001 100 Pfam AUX/IAA family 14 54 IPR033389 -
Trme51270g00001 100 ProSiteProfiles PB1 domain profile. 1 52 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51270g00001 Trme-Chr51270 324 789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51270g00001 1 100 B3 DNA Binding Superfamily AT1G30330 71.963 2.37e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trme51270g00001 AUX_IAA 3e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51270g00001 - - vvo:131603524 198.364