Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51253g00001 GCCACGCAGGTAACAATTGTGGTTGTGGCAGTGCCAGAAGGTCTACCTTTAGCAGTTACCTTAACCCTGGCATACTCGATGCGGAAGATGATGGCAGACAAAGCCTTGGTACGAAGGTTGTCAGCTTGCGAAACCATGGGCTCTGCTACGACAATTTGCAGCGATAAAACTGGAACTTTGACCTTAAACCAGGTGGGTTCCATGATCGGAGGATTAGATAATCTAAGAGGAGTTAGGCCATAA 243 0.4774 ATQVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQVGSMIGGLDNLRGVRP 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51253g00001 80 PANTHER CATION TRANSPORTING ATPASE 2 65 - -
Trme51253g00001 80 SUPERFAMILY Calcium ATPase, transmembrane domain M 4 47 IPR023298 -
Trme51253g00001 80 NCBIfam HAD-IC family P-type ATPase 4 65 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme51253g00001 80 ProSitePatterns E1-E2 ATPases phosphorylation site. 55 61 IPR018303 -
Trme51253g00001 80 Gene3D - 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51253g00001 Trme-Chr51253 69 530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51253g00001 4 64 Primary Pumps ATPases AT4G29900 98.361 1.38e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51253g00001 K01537 - zof:121995363 122.864