Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51223g00001 ATCGCAGTTACCATCGTTGTTGTTGCTGTTCCAGAAGGGCTTCCATTAGCTGTGACATTGAGCCTTGCATTCGCGATGAAAAAAATGATGAACGACAAAGCCCTTGTCCGAAATTTGGCAGCTTGCGAGACCATGGGATCAGCCACAACTATATGTAGTGATAAAACCGGGACCTTAACAACCAATCACATGACTGTTGTGAAAACATGCATTTGTATGAAAAGCAAAGAAGTGAGCAACAAGACTTCTGGTTTGTGCTCTGAACTCCCAGAATCTGCTGTGAAACTGCTGCTACAGTCAATATTTAACAACACAGGAGGAGAGGTTGTGGTTAACAAACAAGGGAAACACGAGATTTTAGGAACTCCAACTGAGACTGCGATATTGGAATTTGGCTTGTCATTAGGTGGTGATTTTCAAGGAGAGAGACAAGCATGCAAGCTTGTTAAAGTTGAGCCATTCAACTCTACTAAGAAAAGAATGGGTGTAGTGGTGGAGCTCCCTAGTGGAGGTTTAAGAGCGCACTGCAAAGGTGCTTCTGAAATAGTTCTTGCTGCTTGCGACAAAGTTCTCAATTCAAATGGCGAGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANATAAACCAGTTTGCTAATGAGGCACTTAGAACTTTATGCCTTGCCTATATGGAATTGGAAAATGGTTTCTCTGCTGAAGACACCATTCCTGTTACTGGATTCACTTGTATTGGAGTTGTTGGCATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTAGCACTATGTCGTTCAGCTGGAATAACAGTAAGAATGGTTACTGGTGACAATATTAATACTGCAAAGGCTATAGCCAGGGAATGTGGGATTTTAACAGATGATGGTATAGCCATTGAAGGTCCAGAATTTAGAGAGAAGAGTTTGGAAGAGTTG 948 0.403 IAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMKSKEVSNKTSGLCSELPESAVKLLLQSIFNNTGGEVVVNKQGKHEILGTPTETAILEFGLSLGGDFQGERQACKLVKVEPFNSTKKRMGVVVELPSGGLRAHCKGASEIVLAACDKVLNSNGEXXXXXXXXXXXXXXXINQFANEALRTLCLAYMELENGFSAEDTIPVTGFTCIGVVGIKDPVRPGVKESVALCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSLEEL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51223g00001 316 FunFam copper-transporting ATPase 1 isoform X2 251 296 - -
Trme51223g00001 316 FunFam Calcium-transporting ATPase 62 256 - -
Trme51223g00001 316 Gene3D - 255 316 IPR023214 -
Trme51223g00001 316 PANTHER CATION TRANSPORTING ATPASE 1 315 - -
Trme51223g00001 316 ProSitePatterns E1-E2 ATPases phosphorylation site. 54 60 IPR018303 -
Trme51223g00001 316 Coils Coil 212 218 - -
Trme51223g00001 316 NCBIfam HAD-IC family P-type ATPase 2 77 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme51223g00001 316 PRINTS P-type cation-transporting ATPase superfamily signature 52 66 - -
Trme51223g00001 316 PRINTS P-type cation-transporting ATPase superfamily signature 271 281 - -
Trme51223g00001 316 PRINTS P-type cation-transporting ATPase superfamily signature 249 260 - -
Trme51223g00001 316 Gene3D - 104 254 IPR023299 GO:0000166
Trme51223g00001 316 SUPERFAMILY HAD-like 40 298 IPR036412 -
Trme51223g00001 316 Gene3D - 1 75 - -
Trme51223g00001 316 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 58 261 IPR023299 GO:0000166
Trme51223g00001 316 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 46 IPR023298 -
Trme51223g00001 316 PRINTS Sodium/potassium-transporting ATPase signature 45 66 - -
Trme51223g00001 316 PRINTS Sodium/potassium-transporting ATPase signature 174 192 - -
Trme51223g00001 316 Pfam Cation transport ATPase (P-type) 112 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51223g00001 Trme-Chr51223 1 948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51223g00001 11 316 Primary Pumps ATPases AT4G37640 80.130 2.54e-173 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51223g00001 K01537 - gmx:547567 536.569