Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51211g00001 GATCCACCCGATGACTCTGTTATTTCGATGTGTGGCCATGTCTTCTGTTATCAATGCGTATCAGAACATTTGACAGGTGATGATAATATGTGCCCTGCAGTTCATTGTAAAGAACAACTTGGTGAAGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCATCTCTGACGATCTTGGTGGCAGTAGTTCTGGAAATTCGAGTCTTGTTGATTATTCACTAGTACAGAACAGTGACTACAGCTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCATTCAAATTGCAAATTGAAGACTCCTTTACTGAATTCCTCCGAAGGAAATAGAGATTCACTGCCTTCTGATGATTCAGATATTGAAGATTTTGATTCAGATGTCAAG 384 0.3958 DPPDDSVISMCGHVFCYQCVSEHLTGDDNMCPAVHCKEQLGEDLVFSKATLRSCISDDLGGSSSGNSSLVDYSLVQNSDYSSSKIKAVLEVLHSNCKLKTPLLNSSEGNRDSLPSDDSDIEDFDSDVK 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51211g00001 128 ProSitePatterns Zinc finger RING-type signature. 11 20 IPR017907 -
Trme51211g00001 128 SUPERFAMILY RING/U-box 3 55 - -
Trme51211g00001 128 Pfam Zinc finger, C3HC4 type (RING finger) 5 32 IPR018957 GO:0046872
Trme51211g00001 128 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 96 - -
Trme51211g00001 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 49 IPR013083 -
Trme51211g00001 128 MobiDBLite consensus disorder prediction 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51211g00001 Trme-Chr51211 93 476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51211g00001 1 94 RAD5 or RAD16-like Gene Family AT1G50410 61.702 5.40e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51211g00001 - - gmx:100811598 167.933