Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51198g00001 ATGTCTGCAGTCCCCAAATTCCTCCTGGATGGCACTTACCAGGGCGGTGCATATACTTTTTGTGACCATCATCATCACCCTGATCCTTCTATTGATGATGATGAATCAAAATTACTTATTCCTCATATGTTTATACCTCCCTGTCTGATTGATTTTGCGAAGGAGATGATTTCTAAGTCCGATGATAAAACCGTTCTGGCAACCTACATCTCTGATGATTTAAAGAAGGACTCTGATTTGCTTCAGCTTTTCAAGTCTAAGTCTAAGGGTGATGTGAAAAGTGCCAATCTTGCTATTGATCAAGAAACTGGATTTAGTGGGAATTTTGGCTTTGTTACCTTTGTCACCAAGGAAGATGCTCACAAGGCTATTCAAGAACTCAATGGTCTTGTGCATGGCGACAAAAGAACCATGACCATGAGCGTTGATTGGGCCATCCCAAGAACAGCCTAA 453 0.415 MSAVPKFLLDGTYQGGAYTFCDHHHHPDPSIDDDESKLLIPHMFIPPCLIDFAKEMISKSDDKTVLATYISDDLKKDSDLLQLFKSKSKGDVKSANLAIDQETGFSGNFGFVTFVTKEDAHKAIQELNGLVHGDKRTMTMSVDWAIPRTA 150
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trme51198g00001 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 147 IPR000504 GO:0003723
Trme51198g00001 150 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 77 148 - -
Trme51198g00001 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 135 IPR000504 GO:0003723
Trme51198g00001 150 SUPERFAMILY RNA-binding domain, RBD 61 148 IPR035979 GO:0003676
Trme51198g00001 150 Gene3D - 51 150 IPR012677 -
Trme51198g00001 150 SMART rrm1_1 64 141 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trme51198g00001 Trme-Chr51198 377 829 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51198g00001 44 149 Eukaryotic Initiation Factors Gene Family AT5G06000 35.714 9.94e-17 73.2